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11441por Boschmann, Alexander, Neuhaus, Dorothee, Vogt, Sarah, Kaltschmidt, Christian, Platzner, Marco, Dosen, Strahinja“…Importantly, the developed system is open source and available for download and further development.…”
Publicado 2021
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11442por Shackelford, Gorm E., Martin, Philip A., Hood, Amelia S. C., Christie, Alec P., Kulinskaya, Elena, Sutherland, William J.“…Metadataset is a proof-of-concept for this type of software, and it is open source. Future studies should improve the user experience, scale the software architecture, agree on standards for data and metadata storage and processing, and develop protocols for responsible evidence use. …”
Publicado 2021
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11443por Dolin, Robert H., Gothi, Shaileshbhai R., Boxwala, Aziz, Heale, Bret S. E., Husami, Ammar, Jones, James, Khangar, Himanshu, Londhe, Shubham, Naeymi-Rad, Frank, Rao, Soujanya, Rapchak, Barbara, Shalaby, James, Suraj, Varun, Xie, Ning, Chamala, Srikar, Alterovitz, Gil“…Here, we describe an open source utility for converting variants from VCF format into HL7 FHIR format. …”
Publicado 2021
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11444“…CONCLUSIONS: Y-LineageTracker is an open-source and user-friendly command-line tool that provide multiple functions to efficiently analyze Y-DNA from NGS data at both Y-SNP and Y-STR level. …”
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11445“…This generalised stomata detection algorithm allows plant scientists to conduct stomata analysis whilst eliminating the need to re-label and re-train for each new dataset. The open-source code shared with this project can be directly deployed in Google Colab or any other Tensorflow environment.…”
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11446por Afshar, Majid, Sharma, Brihat, Bhalla, Sameer, Thompson, Hale M., Dligach, Dmitriy, Boley, Randy A., Kishen, Ekta, Simmons, Alan, Perticone, Kathryn, Karnik, Niranjan S.“…The aim is to externally validate our previously published and open-source machine-learning classifier at a different hospital for identifying cases of opioid misuse. …”
Publicado 2021
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11447por Zhou, Xinyu, Song, Yi, Jiang, Hao, Wang, Qian, Qu, Zhiqiang, Zhou, Xiaoyu, Jit, Mark, Hou, Zhiyuan, Lin, Leesa“…With a Python script, we constructed subsets of Weibo posts focusing on 3 containment measures: lockdown, the test-trace-isolate strategy, and suspension of gatherings. The Baidu open-source sentiment analysis model and latent Dirichlet allocation topic modeling, a widely used machine learning algorithm, were used to assess public engagement, sentiments, and frequently discussed topics on each containment measure. …”
Publicado 2021
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11448“…To facilitate the reuse and further development of systems biology and systems medicine models, an open-source toolbox that makes the overall process of model construction more consistent, understandable, transparent, and reproducible is desired. …”
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11449por Caye, A., Agnew-Blais, J., Arseneault, L., Gonçalves, H., Kieling, C., Langley, K., Menezes, A. M. B., Moffitt, T. E., Passos, I. C., Rocha, T. B., Sibley, M. H., Swanson, J. M., Thapar, A., Wehrmeister, F., Rohde, L. A.“…Machine Learning approaches did not outperform logistic regression models. An open-source and free risk calculator was generated for clinical use and is available online at https://ufrgs.br/prodah/adhd-calculator/. …”
Publicado 2019
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11450por Lee, Kyung Ae, Jin, Heung Yong, Jeong, Seung Han, Kim, Jang Hyeon, Kim, Yuji, Park, Tae Sun“…ATLAS ver. 2.7.6, an OHDSI’s open-source software is publicly available, was used for analysis. …”
Publicado 2021
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11451por Ji, Sarah S., German, Christopher A., Lange, Kenneth, Sinsheimer, Janet S., Zhou, Hua, Zhou, Jin, Sobel, Eric M.“…RESULTS: We present TraitSimulation, an open-source Julia package that makes it trivial to quickly simulate phenotypes under a variety of genetic architectures. …”
Publicado 2021
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11452“…An AI chatbot was also designed to make it easy for patients to use this specialty recommendation system. We used an open-source framework called “Alpha” to develop our AI chatbot. …”
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11453“…Dataset A comprises 500 BUS images from local hospitals, while dataset B comprises 205 open-source BUS images. The experimental results show that the proposed method outperformed its related classic segmentation methods and the state-of-the-art deep learning model RDAU-NET. …”
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11454por Boemo, Michael A.“…Unlike RepNano, DNAscent v2 calls BrdU with single-nucleotide resolution and detects more origins than RepNano from the same sequencing data. DNAscent v2 is open-source and available at https://github.com/MBoemo/DNAscent. …”
Publicado 2021
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11455por Burkom, Howard, Loschen, Wayne, Wojcik, Richard, Holtry, Rekha, Punjabi, Monika, Siwek, Martina, Lewis, Sheri“…RESULTS: The resulting broad utility, applicability, and adaptability of this system led to the adoption of ESSENCE by the Centers for Disease Control and Prevention, numerous state and local health departments, and the Department of Defense, both nationally and globally. The open-source version of Suite for Automated Global Electronic bioSurveillance is available for global, resource-limited settings. …”
Publicado 2021
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11456por Nikolov, Stanislav, Blackwell, Sam, Zverovitch, Alexei, Mendes, Ruheena, Livne, Michelle, De Fauw, Jeffrey, Patel, Yojan, Meyer, Clemens, Askham, Harry, Romera-Paredes, Bernadino, Kelly, Christopher, Karthikesalingam, Alan, Chu, Carlton, Carnell, Dawn, Boon, Cheng, D'Souza, Derek, Moinuddin, Syed Ali, Garie, Bethany, McQuinlan, Yasmin, Ireland, Sarah, Hampton, Kiarna, Fuller, Krystle, Montgomery, Hugh, Rees, Geraint, Suleyman, Mustafa, Back, Trevor, Hughes, Cían Owen, Ledsam, Joseph R, Ronneberger, Olaf“…The model’s generalizability was then demonstrated on 2 distinct open-source data sets, reflecting different centers and countries to model training. …”
Publicado 2021
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11457“…CONCLUSIONS: In this paper, we present a conceptual overview of common techniques used to analyse large volumes of text, and provide reproducible code that can be readily applied to other research studies using open-source software. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-021-01347-1.…”
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11458por Canales, Lea, Menke, Sebastian, Marchesseau, Stephanie, D’Agostino, Ariel, del Rio-Bermudez, Carlos, Taberna, Miren, Tello, Jorge“…Besides the theoretical guidance, we offer SLiCE as an easy-to-use, open-source Python library.…”
Publicado 2021
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11459“…Across Botswana’s health sectors, global interoperability standards and Application Programming Interfaces are widely used, with some level of interoperability within, but not between, public and private facilities. Further, a mix of open source and commercial eRecord systems utilising relational database systems and similar data formats are supported. …”
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11460por Messer, Dolores, Svendsen, Michelle S., Galatius, Anders, Olsen, Morten T., Dahl, Vedrana A., Conradsen, Knut, Dahl, Anders B.“…We assessed the measurement error and investigate bias associated with the use of an open-source, high-resolution structured light scanner called SeeMaLab against the popular Microscribe 3D digitizer arm. …”
Publicado 2021
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