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11461“…METHODS: Using qualitative inquiry informed by the social ecological model, five focus groups were conducted with home based care providers (n = 25) in two settings affected by Hurricane Irma and Hurricane Harvey. An open-source database of home health agencies participating in Centers for Medicare and Medicaid Services programs was used to identify participants. …”
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11462“…This study proposes a series of deep learning-based algorithms which together iteratively identify and localize the position of an ETT relative to the carina on chest radiographs. Using the open-source MIMIC Chest X-Ray (MIMIC-CXR) dataset, a total of 16,000 patients were identified (8000 patients with an ETT and 8000 patients without an ETT). …”
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11463por Santucci, Domiziana, Faiella, Eliodoro, Cordelli, Ermanno, Calabrese, Alessandro, Landi, Roberta, de Felice, Carlo, Beomonte Zobel, Bruno, Grasso, Rosario Francesco, Iannello, Giulio, Soda, Paolo“…A semi-automatic segmentation of the edema was performed for each lesion, using 3D Slicer open-source software. Main radiomics features were extracted and selected using a wrapper selection method. …”
Publicado 2021
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11464“…MATERIALS AND METHODS: A commercial open-source 3D printer was modified to use a standard micrometric syringe and needle as an extruder Figure 1. …”
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11465por Mathur, Ravi, Carnes, Megan U., Harding, Alexander, Moore, Amy, Thomas, Ian, Giarrocco, Alex, Long, Michael, Underwood, Marcia, Townsend, Christopher, Ruiz-Esparza, Roman, Barnette, Quinn, Brown, Linda Morris, Schu, Matthew“…This was subsequently expanded to include the global ME/CFS research community. Using the open-source comprehensive knowledge archive network (CKAN) framework as the base, the ME/CFS Data Management and Coordinating Center developed an online portal with metadata collection, smart search capabilities, and domain-agnostic data integration to support data findability and reusability while reducing the barriers to sustainable data sharing. …”
Publicado 2021
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11466por Peñalvo, José L., Mertens, Elly, Ademović, Enisa, Akgun, Seval, Baltazar, Ana Lúcia, Buonfrate, Dora, Čoklo, Miran, Devleesschauwer, Brecht, Diaz Valencia, Paula Andrea, Fernandes, João C., Gómez, Enrique Javier, Hynds, Paul, Kabir, Zubair, Klein, Jörn, Kostoulas, Polychronis, Llanos Jiménez, Lucía, Lotrean, Lucia Maria, Majdan, Marek, Menasalvas, Ernestina, Nguewa, Paul, Oh, In-Hwan, O’Sullivan, Georgie, Pereira, David M., Reina Ortiz, Miguel, Riva, Silvia, Soriano, Gloria, Soriano, Joan B., Spilki, Fernando, Tamang, Mary Elizabeth, Trofor, Antigona Carmen, Vaillant, Michel, Van Ierssel, Sabrina, Vuković, Jakov, Castellano, José M.“…These heterogeneous datasets will be described, harmonised and integrated into a multi-user data repository operated through Opal-DataSHIELD, an interoperable open-source server application. Federated data analyses, without sharing or disclosing any individual-level data, will be performed with the objective to reveal patients’ baseline characteristics, biomarkers, determinants of COVID-19 prognosis, safety and effectiveness of treatments, and potential strategies against COVID-19, as well as epidemiological patterns. …”
Publicado 2021
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11467por Pereyra, Marc, Drusko, Armin, Krämer, Franziska, Strobl, Frederic, Stelzer, Ernst H. K., Matthäus, Franziska“…CONCLUSIONS: The presented software addresses the need for a fast and open-source 3D PIV package in biological research. Currently, quickPIV offers efficient 2D and 3D PIV analyses featuring zero-normalized and normalized squared error cross-correlations, sub-pixel/voxel approximation, and multi-pass. …”
Publicado 2021
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11468por Boguslav, Mayla R., Hailu, Negacy D., Bada, Michael, Baumgartner, William A., Hunter, Lawrence E.“…RESULTS: Bidirectional encoder representations from transformers for biomedical text mining (BioBERT) for span detection along with the open-source toolkit for neural machine translation (OpenNMT) for concept normalization achieve state-of-the-art performance for most ontologies annotated in the CRAFT Corpus. …”
Publicado 2021
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11469por Were, Martin Chieng, Savai, Simon, Mokaya, Benard, Mbugua, Samuel, Ribeka, Nyoman, Cholli, Preetam, Yeung, Ada“…RESULTS: mUzima is an open-source, highly configurable Android application with robust features including offline management, deduplication, relationship management, security, cohort management, and error resolution, among many others. mUzima allows providers with lower-end Android smartphones (version 4.4 and above) who work remotely to access historical patient data, collect new data, view media, leverage decision support, conduct store-and-forward teleconsultation, and geolocate clients. …”
Publicado 2021
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11470por Ren, Yinlong, Zhang, Luming, Xu, Fengshuo, Han, Didi, Zheng, Shuai, Zhang, Feng, Li, Longzhu, Wang, Zichen, Lyu, Jun, Yin, Haiyan“…METHODS: Data were retrospectively extracted from the Medical Information Mart for Intensive Care (MIMIC-III) open-source clinical database. The definition of Sepsis 3.0 [10] was used, which includes patients with life-threatening organ dysfunction caused by an uncontrolled host response to infection, and SOFA score ≥ 2. …”
Publicado 2022
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11471por Preston, Christine G., Wright, Matt W., Madhavrao, Rao, Harrison, Steven M., Goldstein, Jennifer L., Luo, Xi, Wand, Hannah, Wulf, Bryan, Cheung, Gloria, Mandell, Mark E., Tong, Howard, Cheng, Shaung, Iacocca, Michael A., Pineda, Arturo Lopez, Popejoy, Alice B., Dalton, Karen, Zhen, Jimmy, Dwight, Selina S., Babb, Lawrence, DiStefano, Marina, O’Daniel, Julianne M., Lee, Kristy, Riggs, Erin R., Zastrow, Diane B., Mester, Jessica L., Ritter, Deborah I., Patel, Ronak Y., Subramanian, Sai Lakshmi, Milosavljevic, Aleksander, Berg, Jonathan S., Rehm, Heidi L., Plon, Sharon E., Cherry, J. Michael, Bustamante, Carlos D., Costa, Helio A.“…RESULTS: Here we present the ClinGen Variant Curation Interface (VCI), a global open-source variant classification platform for supporting the application of evidence criteria and classification of variants based on the ACMG/AMP variant classification guidelines. …”
Publicado 2022
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11472por O’Day, Johanna, Lee, Marissa, Seagers, Kirsten, Hoffman, Shannon, Jih-Schiff, Ava, Kidziński, Łukasz, Delp, Scott, Bronte-Stewart, Helen“…We openly share our data and software to further the development and adoption of a general, open-source model that uses raw signals and a standard sensor set for at-home monitoring of freezing of gait. …”
Publicado 2022
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11473por Gourdeau, Daniel, Potvin, Olivier, Archambault, Patrick, Chartrand-Lefebvre, Carl, Dieumegarde, Louis, Forghani, Reza, Gagné, Christian, Hains, Alexandre, Hornstein, David, Le, Huy, Lemieux, Simon, Lévesque, Marie-Hélène, Martin, Diego, Rosenbloom, Lorne, Tang, An, Vecchio, Fabrizio, Yang, Issac, Duchesne, Nathalie, Duchesne, Simon“…We collected CXRs of COVID-19-positive patients from an open-source dataset (COVID-19 image data collection) and from a multi-institutional local ICU dataset. …”
Publicado 2022
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11474por Ghosh, Reena M., Jolley, Matthew A., Mascio, Christopher E., Chen, Jonathan M., Fuller, Stephanie, Rome, Jonathan J., Silvestro, Elizabeth, Whitehead, Kevin K.“…Surgical repair options were digitally designed using proprietary and open-source computer aided design (CAD) based modeling tools. …”
Publicado 2022
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11475“…Given its distinct regulatory purpose, and results reporting requirements, the European Union Clinical Trials Register should be a valuable open-source hub for trial information. Past work examining the European Union Clinical Trials Register has suggested that data quality on the registry may be lacking. …”
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11476“…Hence, we developed and evaluated a bespoke resource utilising Anki™, an open-source, spaced-repetition flashcard program. A total of 1208 flashcards spanning 156 distinct classes of drugs with supplementary summary tables, diagrams and explanatory video and summary guides were created. …”
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11477“…PURPOSE: To evaluate the performance of the open‐source Multi‐Planar U‐Net (MPUnet), the validated Knee Imaging Quantification (KIQ) framework, and a state‐of‐the‐art two‐dimensional (2D) U‐Net architecture on three clinical cohorts without extensive adaptation of the algorithms. …”
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11478Smartphones for musculoskeletal research – hype or hope? Lessons from a decennium of mHealth studies“…Exchange of information on costs, collective app development and usage of open-source tools would help the musculoskeletal community reduce costs of smartphone studies. …”
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11479por Krenzer, Adrian, Makowski, Kevin, Hekalo, Amar, Fitting, Daniel, Troya, Joel, Zoller, Wolfram G., Hann, Alexander, Puppe, Frank“…The software and framework are open-source.…”
Publicado 2022
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11480por Noë, Simon, Corvelyn, Marlies, Willems, Sarah, Costamagna, Domiziana, Aerts, Jean-Marie, Van Campenhout, Anja, Desloovere, Kaat“…Since the program is open source, users can customize it to fit their own analysis requirements. …”
Publicado 2022
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