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  1. 11521
    “…We quantified RNA and protein expression in the 3D space by integrating the open-source cell segmentation software Cell Pose with a fluorescent spot detection pipeline. …”
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    THU559 3D Immuno-smFISH Reveals ER-responsive Cells At The Single-cell Level In ER(+) Breast Cancer
  2. 11522
    “…METHODS: We utilize the open-source R package PACE-HRH for our analysis, which is a stochastic Monte Carlo simulation model that estimates workload for a specified service package and population. …”
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    One size does not fit all: an application of stochastic modeling to estimating primary healthcare needs in Ethiopia at the sub-national level
  3. 11523
    “…The bleed detection ROC analysis for the whole sample gave a high area-under-the-curve (AUC) of 0.92 (with sensitivity and specificity of 83.28% and 95.41%); however, when considering only the mild head injury site, the TBI-bleed detection gave an AUC of 0.70. DISCUSSION: An open-source segmentation tool was used to visualize hemorrhage locations across multiple data sources and revealed quantitative hemorrhage site differences. …”
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    Radiological features of brain hemorrhage through automated segmentation from computed tomography in stroke and traumatic brain injury
  4. 11524
    “…The source code and the trained models are published open source. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00464-023-10447-6.…”
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    Active learning for extracting surgomic features in robot-assisted minimally invasive esophagectomy: a prospective annotation study
  5. 11525
    “…From a technological point of view, open-source, free and extensible tools, like Cytoscape, guarantee a long term sustainability due to the largeness of the developers and users communities, and provide a great flexibility since new functions are continuously added by the developer community through new plug-ins, but the emerging parallel, often closed-source tools like NAViGaTOR, can offer near real-time response time also in the analysis of very huge PINs.…”
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    Online Artículo Texto
    Visualization of protein interaction networks: problems and solutions
  6. 11526
    “…OBJECTIVE: The Suite for Automated Global Electronic bioSurveillance (SAGES) is a collection of modular, flexible, open-source software tools for electronic disease surveillance in resource-limited settings. …”
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    SAGES Update: Electronic Disease Surveillance in Resource-Limited Settings
  7. 11527
    “…Concordant in silico analysis of MYH1, the open-source software tools identified 4 potential nsSNP (L884T, K972C, N981G, and Q1285C) in JNP and 1 nsSNP (H973G) in Berkshire pigs. …”
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    An integrated in silico approach for functional and structural impact of non- synonymous SNPs in the MYH1 gene in Jeju Native Pigs
  8. 11528
    Publicado 2016
    “…We estimated incidence, prevalence, and death with GBD versions of the Estimation and Projection Package (EPP) and Spectrum software originally developed by the Joint United Nations Programme on HIV/AIDS (UNAIDS). We used an open-source version of EPP and recoded Spectrum for speed, and used updated assumptions from systematic reviews of the literature and GBD demographic data. …”
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    Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015: the Global Burden of Disease Study 2015
  9. 11529
    “…RESULTS: To aid in the use of this public resource, we have developed a package called nmrstarlib in the popular open-source programming language Python. The nmrstarlib’s implementation is very efficient, both in design and execution. …”
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    A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank
  10. 11530
    “…A text mining module within the KNIME Analytics Platform, an open source software, was then used to mine the partially processed data to create a terminology corpus of key HIV terms. …”
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    Trends in HIV Terminology: Text Mining and Data Visualization Assessment of International AIDS Conference Abstracts Over 25 Years
  11. 11531
    “…A wrist-worn sensor (Empatica E4) was used to collect time-stamped data, including 3-axis accelerometry, skin temperature, blood volume pressure, heart rate, heartbeat inter-beat interval, and electrodermal activity (EDA). Open-source R packages were employed to automatically organize, clean, geocode, and visualize the biometric data. …”
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    Stress experiences in neighborhood and social environments (SENSE): a pilot study to integrate the quantified self with citizen science to improve the built environment and health
  12. 11532
    “…METHODS AND FINDINGS: The Impacts of Cycling Tool (ICT) is an open source model with a web interface for visualising travel patterns and comparing the impacts of different scenarios of cycling uptake. …”
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    Development of the Impacts of Cycling Tool (ICT): A modelling study and web tool for evaluating health and environmental impacts of cycling uptake
  13. 11533
    “…Six common classification algorithms with built‐in feature selection (decision tree, random forest, neural network, support vector machine, elastic net logistic regression, LogitBoost) were applied on each dataset using the popular open‐source R package caret. The R code and documentation for the analysis are available online (https://github.com/timodeist/classifier_selection_code). …”
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    Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers
  14. 11534
    “…Discussion: Own previous work, the use of internationally successful open source systems and a state-of-the-art software architecture are cornerstones of our approach. …”
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    Data Integration for Future Medicine (DIFUTURE): An Architectural and Methodological Overview
  15. 11535
    “…In this study we employed four synthetic data sets (variants with known mutations spiked into specific genomic locations) of increasing complexity to assess the sensitivity, specificity, and balanced accuracy of five open-source variant callers: FreeBayes v1.0, VarDict v11.5.1, MuTect v1.1.7, MuTect2, and MuSE v1.0rc. …”
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    Comparing the performance of selected variant callers using synthetic data and genome segmentation
  16. 11536
    “…The rule-based system was implemented using the open source NLP pipeline MedTagger, developed by Mayo Clinic. …”
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    Natural Language Processing for the Identification of Silent Brain Infarcts From Neuroimaging Reports
  17. 11537
    “…The tool was built using 3 open-source software products: PostgreSQL, Ruby on Rails, and Semantic UI. …”
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    A Software Tool Aimed at Automating the Generation, Distribution, and Assessment of Social Media Messages for Health Promotion and Education Research
  18. 11538
    “…Finally, we tested generalizability of our approach using a second, open-source, image analysis platform and found similar results. …”
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    Empiric Methods to Account for Pre-analytical Variability in Digital Histopathology in Frontotemporal Lobar Degeneration
  19. 11539
    por Kockel, Lutz, Griffin, Catherine, Ahmed, Yaseen, Fidelak, Lauren, Rajan, Arjun, Gould, Ethan P., Haigney, Myles, Ralston, Benjamin, Tercek, Rex J., Galligani, Lara, Rao, Sagar, Huq, Lutfi, Bhargava, Hersh K., Dooner, Ailis C., Lemmerman, Emily G., Malusa, Ruby F., Nguyen, Tran H., Chung, Julie S., Gregory, Sara M., Kuwana, Kiyomasa M., Regenold, Jonathan T., Wei, Alexander, Ashton, Jake, Dickinson, Patrick, Martel, Kate, Cai, Connie, Chen, Carissa, Price, Stephen, Qiao, Jeffrey, Shepley, David, Zhang, Joanna, Chalasani, Meghana, Nguyen, Khanh, Aalto, August, Kim, ByungJun, Tazawa-Goodchild, Erik, Sherwood, Amanda, Rahman, Ahmad, Wu, Sum Ying Celeste, Lotzkar, Joel, Michaels, Serena, Aristotle, Hillary, Clark, Antigone, Gasper, Grace, Xiang, Evan, Schlör, Frieda Luna, Lu, Melissa, Haering, Kate, Friberg, Julia, Kuwana, Alyssa, Lee, Jonathan, Liu, Alan, Norton, Emma, Hamad, Leena, Lee, Clara, Okeremi, Dara, diTullio, Harry, Dumoulin, Kat, Chi, Sun Yu Gordon, Derossi, Grayson S., Horowitch, Rose E., Issa, Elias C., Le, Dan T., Morales, Bryce C., Noori, Ayush, Shao, Justin, Cho, Sophia, Hoang, Mai N., Johnson, Ian M., Lee, Katherine C., Lee, Maria, Madamidola, Elizabeth A., Schmitt, Katrina E., Byan, Gabriel, Park, Taeyoung, Chen, Jonathan, Monovoukas, Alexi, Kang, Madison J., McGowan, Tanner, Walewski, Joseph J., Simon, Brennan, Zu, Sophia J., Miller, Gregory P., Fitzpatrick, Kate B., Lantz, Nicole, Fox, Elizabeth, Collette, Jeanette, Kurtz, Richard, Duncan, Chris, Palmer, Ryan, Rotondo, Cheryl, Janicki, Eric, Chisholm, Townley, Rankin, Anne, Park, Sangbin, Kim, Seung K.
    Publicado 2019
    “…Thus, unique partnerships between secondary schools and university-based programs have produced and characterized novel genetic and molecular resources in Drosophila for open-source distribution, and provide paradigms for development of science education through experience-based pedagogy.…”
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    An Interscholastic Network To Generate LexA Enhancer Trap Lines in Drosophila
  20. 11540
    “…Therefore, a novel ambulatory assessment application for the open-source behavioral intervention platform MobileCoach (AAMC) was developed. …”
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    Social Support and Common Dyadic Coping in Couples' Dyadic Management of Type II Diabetes: Protocol for an Ambulatory Assessment Application
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