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  1. 11541
    Publicado 2019
    “…For countries and territories with data from population-based seroprevalence surveys or antenatal care clinics, we estimated prevalence and incidence using an open-source version of the Estimation and Projection Package—a natural history model originally developed by the UNAIDS Reference Group on Estimates, Modelling, and Projections. …”
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    Global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2017, and forecasts to 2030, for 195 countries and territories: a systematic analysis for the Global Burden of Diseases, Injuries, and Risk Factors Study 2017
  2. 11542
    por Mansouri, Kamel, Kleinstreuer, Nicole, Abdelaziz, Ahmed M., Alberga, Domenico, Alves, Vinicius M., Andersson, Patrik L., Andrade, Carolina H., Bai, Fang, Balabin, Ilya, Ballabio, Davide, Benfenati, Emilio, Bhhatarai, Barun, Boyer, Scott, Chen, Jingwen, Consonni, Viviana, Farag, Sherif, Fourches, Denis, García-Sosa, Alfonso T., Gramatica, Paola, Grisoni, Francesca, Grulke, Chris M., Hong, Huixiao, Horvath, Dragos, Hu, Xin, Huang, Ruili, Jeliazkova, Nina, Li, Jiazhong, Li, Xuehua, Liu, Huanxiang, Manganelli, Serena, Mangiatordi, Giuseppe F., Maran, Uko, Marcou, Gilles, Martin, Todd, Muratov, Eugene, Nguyen, Dac-Trung, Nicolotti, Orazio, Nikolov, Nikolai G., Norinder, Ulf, Papa, Ester, Petitjean, Michel, Piir, Geven, Pogodin, Pavel, Poroikov, Vladimir, Qiao, Xianliang, Richard, Ann M., Roncaglioni, Alessandra, Ruiz, Patricia, Rupakheti, Chetan, Sakkiah, Sugunadevi, Sangion, Alessandro, Schramm, Karl-Werner, Selvaraj, Chandrabose, Shah, Imran, Sild, Sulev, Sun, Lixia, Taboureau, Olivier, Tang, Yun, Tetko, Igor V., Todeschini, Roberto, Tong, Weida, Trisciuzzi, Daniela, Tropsha, Alexander, Van Den Driessche, George, Varnek, Alexandre, Wang, Zhongyu, Wedebye, Eva B., Williams, Antony J., Xie, Hongbin, Zakharov, Alexey V., Zheng, Ziye, Judson, Richard S.
    Publicado 2020
    “…DISCUSSION: The strengths and limitations of the consensus predictions were discussed with example chemicals; then, the models were implemented into the free and open-source OPERA application to enable screening of new chemicals with a defined applicability domain and accuracy assessment. …”
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    CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity
  3. 11543
    por Shafer, Michael
    Publicado 2020
    “…This article traces the experiential learning process by which Warm Heart and its partners achieved their goals and shares Warm Heart’s open source solution. It serves four purposes. The article closely explores an experiential learning process. …”
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    Global crop waste burning – micro-biochar; how a small community development organization learned experientially to address a huge problem one tiny field at a time
  4. 11544
    “…OBJECTIVE: The aim of this study was to compare a dental primary care method of data capture (intraoral scanner) with a precision hospital-based method (laser profilometer) in addition to comparing open source and commercial software available for data analysis. …”
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    Influence of Scanner Precision and Analysis Software in Quantifying Three-Dimensional Intraoral Changes: Two-Factor Factorial Experimental Design
  5. 11545
    por Bond‐Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Altaf Arain, M., Armesto, Juan J., Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Andrew Black, Thomas, Buchmann, Nina, Carbone, Mariah S., Chang, Shih‐Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El‐Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn‐Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin‐Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Perez‐Quezada, Jorge F., Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez‐Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L., Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, Zou, Junliang
    Publicado 2020
    “…Here we describe the lightweight, open‐source COSORE (COntinuous SOil REspiration) database and software, that focuses on automated, continuous and long‐term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses and model evaluation. …”
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    COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data
  6. 11546
    “…During 2013–2017, an electronic surveillance system based on open source software, District Health Information System 2 (DHIS2), was implemented as part of a private sector malaria case management and surveillance programme. …”
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    Costing electronic private sector malaria surveillance in the Greater Mekong Subregion
  7. 11547
    “…METHODS: A retrospective analysis of adults experiencing MS relapse from January 2015 to December 2018 was conducted using a de-identified open-source claims database [Symphony Health Integrated Dataverse(®) (IDV)]. …”
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    Consequences of Insurance Denials Among U.S. Patients Prescribed Repository Corticotropin Injection for Acute Exacerbations of Multiple Sclerosis
  8. 11548
    “…METHODS: The application in this study draws on an existing tracking tool. With this open-source and browser-based online tracking system, we aim to minimize the time required to inform the tested person and the testing units (eg, hospitals or the public health care system). …”
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    Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System
  9. 11549
    “…There is a need for open-source databases of expert quality ratings to foster informed health care decisions by users and health care providers.…”
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    Quality of Physical Activity Apps: Systematic Search in App Stores and Content Analysis
  10. 11550
    “…RESULTS: We collected four open-source medical language datasets, including TrialClassification for Chinese medical trial text multi label classification, BC5CDR for English biomedical text name entity recognition, DiabetesNER for Chinese diabetes entity recognition and BIOSSES for English biomedical sentence similarity estimation. …”
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    Transformers-sklearn: a toolkit for medical language understanding with transformer-based models
  11. 11551
    “…CONCLUSIONS: LLAMA provides an effective open source tool for running a cell microscopy analysis pipeline based on semantic segmentation, object analysis and tracking. …”
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    LLAMA: a robust and scalable machine learning pipeline for analysis of large scale 4D microscopy data: analysis of cell ruffles and filopodia
  12. 11552
    “…OBJECTIVE: This study aims to analyze the pilot implementation of a modified PACER system for electronic case reporting and describe how this FHIR-based, open-source, and interoperable system allows health systems to conduct public health reporting while maintaining the appropriate governance of the clinical data. …”
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    A Modified Public Health Automated Case Event Reporting Platform for Enhancing Electronic Laboratory Reports With Clinical Data: Design and Implementation Study
  13. 11553
    “…Two readers independently segmented GGOs on HRCTs using a semi-automated approach, and radiomics features were extracted using a standard open source software (PyRadiomics). Partial least square (PLS) regression was used as the multivariate machine-learning algorithm. …”
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    Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease
  14. 11554
    “…The methods described in this paper are implemented in the open-source R package marr, which is freely available from Bioconductor at http://bioconductor.org/packages/marr.…”
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    Reproducibility of mass spectrometry based metabolomics data
  15. 11555
    “…Using OncoCast-MPM, an open-source, web-accessible, machine-learning risk-prediction model, we integrated available data to create risk scores that stratified patients into low-risk and high-risk groups. …”
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    The use of a next-generation sequencing-derived machine-learning risk-prediction model (OncoCast-MPM) for malignant pleural mesothelioma: a retrospective study
  16. 11556
    “…Twenty-eight tools integrated all three functionalities upon collection of additional information from the tool developer websites. The majority were open source, capable of offline data collection and data visualisation. …”
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    Electronic data collection, management and analysis tools used for outbreak response in low- and middle-income countries: a systematic review and stakeholder survey
  17. 11557
    Publicado 2021
    “…METHODS: We compared data from the USA National Vital Statistics System (NVSS) to three non-governmental, open-source databases on police violence: Fatal Encounters, Mapping Police Violence, and The Counted. …”
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    Fatal police violence by race and state in the USA, 1980–2019: a network meta-regression
  18. 11558
    “…The value of this consumer-grade multisensor wearable in terms of tackling clinical and research questions could be enhanced with open-source algorithms, raw data access, and the ability to blind participants to their own sleep data.…”
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    Validation of Fitbit Charge 2 Sleep and Heart Rate Estimates Against Polysomnographic Measures in Shift Workers: Naturalistic Study
  19. 11559
    por Zeng, Cui, Wu, Anhua, Li, Liuyi, Jia, Huixue
    Publicado 2021
    “…The statistical analysis was performed by SPSS 25.0 software and website of Open Source Epidemiologic Statistics for Public Health. …”
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    Multi-center prospective study on central line-associated bloodstream infections in 79 ICUs of China
  20. 11560
    “…RESULTS: The ad hoc federated infrastructure was designed and built upon open source technologies, providing partners with the capacity to exploit their data and generate dashboards exploring the stroke care pathways. …”
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    Coping with interoperability in the development of a federated research infrastructure: achievements, challenges and recommendations from the JA-InfAct
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