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  1. 11621
    “…We leveraged the power of the Observational Medical Outcomes Partnership common data model to create an open-source software package to increase the consistency, speed, and transparency of this process. …”
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    Online Artículo Texto
    Using Iterative Pairwise External Validation to Contextualize Prediction Model Performance: A Use Case Predicting 1-Year Heart Failure Risk in Patients with Diabetes Across Five Data Sources
  2. 11622
    “…METHODS: This cross-sectional, observational survey utilized an online survey using open-source web-based software was used to investigate MAs physiological and medical-related parameters. …”
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    Online Artículo Texto
    Prevalence of hyperglycemia in masters athletes
  3. 11623
    “…HYPOTHESIS: Mapping air pollution’s health impacts at the community level using publicly available data and open-source software will provide a replicable strategy for catalyzing pollution prevention. …”
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    Online Artículo Texto
    A replicable strategy for mapping air pollution’s community-level health impacts and catalyzing prevention
  4. 11624
    “…REViewer and FlipBook are available under open-source licenses at https://github.com/illumina/REViewer and https://github.com/broadinstitute/flipbook respectively. …”
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    Online Artículo Texto
    REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats
  5. 11625
    “…RESULTS: To create a knowledge provider system within the Translator project, we have developed RTX-KG2, an open-source software system for building—and hosting a web API for querying—a biomedical knowledge graph that uses an Extract-Transform-Load approach to integrate 70 knowledge sources (including the aforementioned core six sources) into a knowledge graph with provenance information including (where available) citations. …”
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    Online Artículo Texto
    RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine
  6. 11626
    “…The raster layers make use of the Dutch projected coordinate system (EPSG:28992 Amersfoort / RD New), are each ∼1 GB in size, and can be readily used by ecologists in a geographic information system (GIS) or analytical open-source software such as R and Python. Even though the class ‘1: Unclassified’ mainly includes vegetation points, other objects such as cars, fences, and boats can also be present in this class, introducing potential biases in the derived data products. …”
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    Online Artículo Texto
    Country-wide data of ecosystem structure from the third Dutch airborne laser scanning survey
  7. 11627
    “…Conclusion Specvis, a computer-based free open-source software used in our study, can give promising results in diagnosing as well as monitoring the progression of visual field defects. …”
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    Online Artículo Texto
    Personal Computer-Based Visual Field Testing as an Alternative to Standard Automated Perimetry
  8. 11628
    “…This implementation is included in the open source R package BayesfMRI. RESULTS: We find that residual autocorrelation exhibits marked spatial variance across the cortex and is influenced by many factors including the task being performed, the specific acquisition protocol, mis-modeling of the hemodynamic response function, unmodeled noise due to subject head motion, and systematic individual differences. …”
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    Online Artículo Texto
    Sources of residual autocorrelation in multiband task fMRI and strategies for effective mitigation
  9. 11629
    “…RESULTS: Here, we build on years of analytical experience with diverse sample types to develop MetaboDirect, an open-source, command-line-based pipeline for the analysis (e.g., chemodiversity analysis, multivariate statistics), visualization (e.g., Van Krevelen diagrams, elemental and molecular class composition plots), and presentation of direct injection high-resolution FT-ICR MS data sets after molecular formula assignment has been performed. …”
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    MetaboDirect: an analytical pipeline for the processing of FT-ICR MS-based metabolomic data
  10. 11630
    “…The sharing of training and testing datasets on an open-source platform will also contribute to existing data. …”
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    Online Artículo Texto
    Development and testing of a multi-lingual Natural Language Processing-based deep learning system in 10 languages for COVID-19 pandemic crisis: A multi-center study
  11. 11631
    “…</li> <li>Data analysis at scale</li> </ul> <h4>About the speakers</h4> <p style="text-align: justify;">Juha-Matti is a Systems architect with broad experience in different ICT technologies and fields of application, with focus on open source technologies, security, and embedded solutions.…”
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    High performance in software development
  12. 11632
    “…It builds on proven geospatial methods, implements open-source algorithms, and relies heavily on vector ecology knowledge and the involvement of local experts. …”
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    Online Artículo Texto
    Fine-scale mapping of urban malaria exposure under data scarcity: an approach centred on vector ecology
  13. 11633
    “…BACKGROUND: In the wake of the SARS-CoV-2 pandemic, scientists have scrambled to collect and analyze SARS-CoV-2 genomic data to inform public health responses to COVID-19 in real time. Open source phylogenetic and data visualization platforms for monitoring SARS-CoV-2 genomic epidemiology have rapidly gained popularity for their ability to illuminate spatial-temporal transmission patterns worldwide. …”
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    Online Artículo Texto
    Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions
  14. 11634
    “…Sleep spindles (amplitude, peak frequency, oscillation count, symmetry index, slow oscillation phase peak, duration, density, and dispersion) were calculated in N2 sleep using an open-source Luna package. Statistical analysis was done using a univariate analysis of spindle and spectral features via linear mixed-effects regression. …”
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    Online Artículo Texto
    Comparison of sleep microarchitecture in screen failure subjects with insomnia complaints and randomized subjects from two phase 3 studies on insomnia disorder
  15. 11635
    “…METHODS: In this retrospective cohort study using IQVIA open-source pharmacy and medical claims data, we identified patients with ≥ 1 claim for a nAMSM (ubrogepant, rimegepant, lasmiditan) between 01/01/2020 and 09/30/2020 (index period). …”
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    Treatment patterns for patients initiating novel acute migraine specific medications (nAMSMs) in the context of monoclonal antibodies (mAbs) targeting the calcitonin gene-related peptide (CGRP) pathway
  16. 11636
    “…It is the authors’ aim that the TECH-VER checklist transforms itself to an open-source living document, with possible future versions, or ‘bolt-on’ extensions for specific applications with additional ‘fit-for-purpose’ tests, as well as ‘tips and tricks’ and some demonstrative error examples. …”
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    TECH-VER: A Verification Checklist to Reduce Errors in Models and Improve Their Credibility
  17. 11637
    “…To demonstrate how to address these problems, we have developed the open-source Oral Health and Disease Ontology (OHD) and our instance-based representation as a framework for dental and medical health care information. …”
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    Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology
  18. 11638
    “…The electrical design, microcontroller software and graphical user interface developed here are included as open source material to facilitate additional research into digitally-controlled surface stimulation (github.com/NIHFAB/NMES). …”
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    Toward a hybrid exoskeleton for crouch gait in children with cerebral palsy: neuromuscular electrical stimulation for improved knee extension
  19. 11639
    por Tas, Jeanette, van Gassel, Rob J J, Heines, Serge J H, Mulder, Mark M G, Heijnen, Nanon F L, Acampo-de Jong, Melanie J, Bels, Julia L M, Bennis, Frank C, Koelmann, Marcel, Groven, Rald V M, Donkers, Moniek A, van Rosmalen, Frank, Hermans, Ben J M, Meex, Steven J R, Mingels, Alma M A, Bekers, Otto, Savelkoul, Paul H M, Oude Lashof, Astrid M L, Wildberger, Joachim E, Tijssen, Fabian H, Buhre, Wolfgang F F A, Sels, Jan-Willem E M, Ghossein-Doha, Chahinda, Driessen, Rob G H, Kubben, Pieter L, Janssen, Marcus L F, Nicolaes, Gerry A F, Strauch, Ulrich, Geyik, Zafer, Delnoij, Thijs S R, Walraven, Kim H M, Stehouwer, Coen D A, Verbunt, Jeanine A M C F, van Mook, Walther N K A, van Santen, Susanne, Schnabel, Ronny M, Aries, Marcel J H, van de Poll, Marcel C G, Bergmans, Dennis C J J, van der Horst, Iwan C C, van Kuijk, Sander M J, van Bussel, Bas C T
    Publicado 2020
    “…The MaastrICCht is also designed to foster various other studies and registries and intends to create an open-source database for investigators. Therefore, a major part of the data collection is aligned with an existing national intensive care data registry and two international COVID-19 data collection initiatives. …”
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    Serial measurements in COVID-19-induced acute respiratory disease to unravel heterogeneity of the disease course: design of the Maastricht Intensive Care COVID cohort (MaastrICCht)
  20. 11640
    “…OBJECTIVE: We aim to explore the utility of the recently developed open-source mobile health platform Remote Assessment of Disease and Relapse (RADAR)–base as a toolbox to rapidly test the effect and response to NPIs intended to limit the spread of COVID-19. …”
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    Using Smartphones and Wearable Devices to Monitor Behavioral Changes During COVID-19
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