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18481por Faye, Oumar, Faye, Ousmane, Diallo, Diawo, Diallo, Mawlouth, Weidmann, Manfred, Sall, Amadou Alpha“…RESULTS: The NS5 protein coding regions of African ZIKV isolates were sequenced and aligned with representative flaviviruses sequences from GenBank to design primers and probe from conserved regions. The analytical sensitivity of the assay was evaluated to be 32 genome-equivalents and 0.05 plaque forming unit (pfu). …”
Publicado 2013
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18482por Simo, Gustave, Njitchouang, Guy Roger, Melachio, Tresor Tito Tanekou, Njiokou, Flobert, Cuny, Gerard, Tazoacha, Asonganyi“…DNA was extracted from midguts and blood samples, and specific primers were used to identify trypanosomes of the subgenus Trypanozoon. …”
Publicado 2014
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18483“…METHODOLOGY/PRINCIPAL FINDINGS: The cDNA of KIF3A and KIF3B were obtained by designing degenerate primers, 3′RACE, and 5′RACE. We detected the genetic presence of kif3a and kif3b in the heart, muscle, liver, gill, and testis of E. sinensis through RT-PCR. …”
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18484por Cosson, Jean-François, Michelet, Lorraine, Chotte, Julien, Le Naour, Evelyne, Cote, Martine, Devillers, Elodie, Poulle, Marie-Lazarine, Huet, Dominique, Galan, Maxime, Geller, Julia, Moutailler, Sara, Vayssier-Taussat, Muriel“…METHODS: We analyzed 268 ticks (Ixodes ricinus) and 72 bank voles (Myodes glareolus) collected and trapped in France for the presence of DNA from B. miyamotoi as well as from Lyme spirochetes using q-PCR and specific primers and probes. We then compared the French genotypes with those found in other European countries. …”
Publicado 2014
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18485“…Phylogenetic analysis of the 19 proteins indicated that the IiDIR genes cluster into three distinct subfamilies, DIR-a, DIR-b/d, and DIR-e, of a larger plant DIR and DIR-like gene family. Gene-specific primers were designed for 19 unique IiDIRs and were used to evaluate patterns of constitutive expression in different organs. …”
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18486por Datta, Somenath, Roychoudhury, Shrabasti, Ghosh, Alip, Dasgupta, Debanjali, Ghosh, Amit, Chakraborty, Bidhan, Roy, Sukanta, Gupta, Subash, Santra, Amal Kumar, Datta, Simanti, Das, Kausik, Dhali, Gopal Krishna, Chowdhury, Abhijit, Banerjee, Soma“…METHODS: The assessment of HBV genotypes was performed by nested PCR using either surface or HBx specific primers from both the circulating virus in the serum and replicative virus that includes covalently closed circular DNA (cccDNA) and relaxed circular DNA (rcDNA) of HBV from the intrahepatic tissue. …”
Publicado 2014
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18487por Williams-Newkirk, Amanda Jo, Rowe, Lori A., Mixson-Hayden, Tonya R., Dasch, Gregory A.“…Pyrosequencing was performed with barcoded eubacterial primers targeting variable 16S rRNA gene regions 5–3. …”
Publicado 2014
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18488por Dinzouna-Boutamba, Sylvatrie-Danne, Yang, Hye-Won, Joo, So-Young, Jeong, Sookwan, Na, Byoung-Kuk, Inoue, Noboru, Lee, Won-Ki, Kong, Hyun-Hee, Chung, Dong-Il, Goo, Youn-Kyoung, Hong, Yeonchul“…METHOD: A LAMP assay targeting the α-tubulin gene for the detection of P. vivax was developed with six primers that recognize different regions of the target gene. …”
Publicado 2014
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18489“…Individual cells of radiolarians were isolated, and PCRs were performed with generalist primers to amplify the V4 and V9 regions. Different denoising procedures were employed to filter the pyrosequenced raw amplicons (Acacia, AmpliconNoise, Linkage method). …”
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18490por Wu, Qiu-Yue, Li, Na, Li, Wei-Wei, Li, Tian-Fu, Zhang, Cui, Cui, Ying-Xia, Xia, Xin-Yi, Zhai, Jin-Sheng“…The three discrete regions, AZFa, AZFb and AZFc, located on the long arm of the Y chromosome, were performed by multiplex PCRs(Polymerase Chain Reaction) amplification. The set of PCR primers for the diagnosis of microdeletion of the AZFa, AZFb and AZFc region included: sY84, sY86, sY127, sY134, sY254, sY255, SRY and ZFX/ZFY. …”
Publicado 2014
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18491por Xu, Yu, Huang, Lulin, Li, Jing, Zhang, Qi, Fei, Ping, Zhu, Xiong, Tai, Zhengfu, Ma, Shi, Gong, Bo, Li, Yun, Zang, Weizhou, Zhu, Xianjun, Zhao, Peiquan, Yang, Zhenglin“…METHODS: Mutation screening was performed by directly sequencing PCR products of genomic DNA with primers designed to amplify the seven coding exons and adjacent intronic regions of the FEVR-causing gene TSPAN12. …”
Publicado 2014
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18492por Tarnagda, Zékiba, Yougbaré, Issaka, Ilboudo, Abdoul K, Kagoné, Thérèse, Sanou, Armel M, Cissé, Assana, Médah, Isaïe, Yelbéogo, Denis, Talla Nzussouo, Ndahwouh“…Influenza viruses were detected by real-time RT-PCR using CDC primers, probes, and protocols. RESULTS: The first three ILI cases were enrolled each day; of 881 outpatients with ILI enrolled and sampled, 58 (6·6%) tested positive for influenza viruses (29 influenza A and 29 influenza B). …”
Publicado 2014
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18493por Mkada–Driss, Imen, Lahmadi, Ramzi, Chakroun, Ahmed S., Talbi, Chiraz, Guerbouj, Souheila, Driss, Mehdi, Elamine, Elwaleed M., Cupolillo, Elisa, Mukhtar, Moawia M., Guizani, Ikram“…A total of 155 bands were amplified of which 60.65% appeared polymorphic. 7 out of 28 primers provided monomorphic patterns. Phenetic analysis allowed clustering the parasites according to their geographical origin. …”
Publicado 2014
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18494por Salipante, Stephen J., Fromm, Jonathan R., Shendure, Jay, Wood, Brent L., Wu, David“…Exon 12 of NPM1 was PCR amplified using sequencing adaptor-linked primers and deep sequenced to enable detection of low-prevalence, acute myeloid leukemia-specific activating mutations. …”
Publicado 2014
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18495“…Methylation-specific quantitative polymerase chain reaction (MS-qPCR) was performed using primers for unmethylated and methylated copies of the X-ch inactive-specific transcript (XIST-U and XIST-M) gene. …”
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18496por Neglia, Gianluca, Veneziano, Vincenzo, De Carlo, Esterina, Galiero, Giorgio, Borriello, Giorgia, Francillo, Matteo, Campanile, Giuseppe, Zicarelli, Luigi, Manna, Laura“…DNA and RNA detection by Real Time PCR. In particular, primers and probes potentially targeting the 16S rRNA and the Brucella Cell Surface 31 kDalton Protein (bcsp31) genes were used for Real Time PCR and buffalo β actin was used as a housekeeping gene to quantify host DNA in the sample. …”
Publicado 2013
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18497“…Of the 207 HBsAg-negative children, nine displayed HBV DNA positive by two nested PCR assays using primers derived from S and C genes. However, the sequence alignment showed that the sequences in each child were considerably different from those in his/her mother. …”
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18498“…RESULTS: To genetically map expressed RGHs, 100 potential pathogenesis-related proteins (PRPs) and 215 resistance gene analogs (RGAs) were identified in the cotton expressed sequence tag database, and 347 specific primers were developed. Meanwhile, 61 cotton genome-derived RGA markers and 24 resistance gene analog polymorphism (RGAP) markers from published papers were included to view their genomic distribution. …”
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18499“…The study focused on amplification, clone library generation and sequencing of the arsenite oxidase large sub-unit gene aioA and 16S rRNA marker, with respect to changes in elemental concentrations. New set of primers were designed to amplify the aioA gene as a phylogenetic marker to study taxonomically diverse arsenite oxidizing bacterial groups in these aquifers. …”
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18500por Wu, Yuan, Zhou, Hai-jian, Che, Jie, Li, Wen-ge, Bian, Fu-ning, Yu, Shuan-bao, Zhang, Li-juan, Lu, Jinxing“…RESULTS: DNA sequences containing over 10 bi- or tri-nucleotide repeats were selected from the C. tropicalis genome database. Thirty PCR primers sets specific for the microsatellite loci were designed and tested using eight clinically independent isolates. …”
Publicado 2014
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