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4681por Rasool, Alvina, Zahid, Saba, Ans, Muhammad, Muhammad, Shabbir, Ayub, Khurshid, Iqbal, Javed“…[Image: see text] This quantum mechanical study focuses on the designing of twelve (MPAM1–MPAM12) bithieno thiophene (BTTI) central core-based small molecules to explore optoelectronic properties as donor candidates for organic solar cells (OSCs) and hole transport materials (HTMs) accompanied by enhanced charge mobility for perovskite solar cells (PSCs). …”
Publicado 2021
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4682“…To further validate the results, more accurate quantum mechanical (QM) calculations were also carried out, and the energetics between the QM and MM calculations are found to be similar. …”
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4683“…Here, we investigate the mechanism of how the conserved protein environment induces mixed-valence pair formation in the Fe(4)S(4) clusters, F(X), F(A), and F(B) in photosystem I, using a quantum mechanical/molecular mechanical approach. Exchange coupling between Fe sites is predominantly determined by the shape of the Fe(4)S(4) cluster, which is stabilized by the preorganized protein electrostatic environment. …”
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4684“…Diatomic molecules are the smallest molecules possessing chemical bonds and play key roles in atmospheric chemistry, biochemistry, lab chemistry, and chemical manufacturing. Here we quantum-mechanically calculate bond orders for 288 diatomic molecules and ions. …”
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4685por Orabi, Esam A.“…While crystal structures show the amine-one form, the identity of the tautomeric form in solution and the structure–antioxidant activity relationship of these compounds are not clear. We perform quantum mechanical investigations on nine 4-acylpyrazolone-based Schiff bases at the B3LYP/6-311++G(d,p) level of theory in the gas phase and in chloroform, dimethyl sulfoxide, and water using the polarizable continuum model (PCM). …”
Publicado 2018
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4686“…[Image: see text] The theoretical prediction of molecular electronic spectra by means of quantum mechanical (QM) computations is fundamental to gain a deep insight into many photophysical and photochemical processes. …”
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4687por Reinhardt, Clorice R., Konstantinovsky, Daniel, Soudackov, Alexander V., Hammes-Schiffer, Sharon“…Most of the input rate constants for this kinetic model are obtained from previous experimental measurements and quantum mechanical/molecular mechanical free-energy simulations. …”
Publicado 2022
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4688“…After applying the quantum-mechanical harmonic oscillator entropy formalism, we establish a similarly strong linear relationship for X-ray crystallographic B-factors. …”
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4689por Vakali, Vasiliki, Papadourakis, Michail, Georgiou, Nikitas, Zoupanou, Nikoletta, Diamantis, Dimitrios A., Javornik, Uroš, Papakyriakopoulou, Paraskevi, Plavec, Janez, Valsami, Georgia, Tzakos, Andreas G., Tzeli, Demeter, Cournia, Zoe, Mauromoustakos, Thomas“…Using T1 relaxation experiments and 2D DOSY it was illustrated that both cyclodextrin vehicles can host quercetin. Quantum mechanical calculations showed the formation of hydrogen bonds between QUE with 2HP-β-CD and 2,6Μe-β-CD. …”
Publicado 2022
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4690“…Here, we show the derivation of L-DOPA and Droxidopa OPLS all atom (AA) force field (FF) parameters via quantum mechanical (QM) calculations, molecular dynamics (MD) simulations in aqueous solutions of the two catecholamines and the molecular docking of both ligands into rigid and flexible [Formula: see text] (2)AR models. …”
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4691“…Horse liver alcohol dehydrogenase catalyzes hydrogen transfer with quantum-mechanical tunneling that involves fast motions in the active site. …”
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4692“…Therefore, for the Kaempferol and Quercetin complexes, hybrid quantum mechanical/molecular mechanical (QM/MM) geometry and frequency calculations were performed, followed by the local mode analysis developed in our group to quantify Kaempferol-NS and Quercetin-NS hydrogen bonding. …”
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4693por Das, Debasish, Biswas, Sujoy, Rao Dumpala, Rama Mohana, Pente, Avinash S., Manohar, Smitha“…Density functional theory-based quantum mechanical calculations have been performed in order to unravel the extraction mechanism with the present solvent system.…”
Publicado 2022
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4694“…Relative to coupled‐cluster quantum mechanical calculations, we find that ANI‐1ccx most accurately reproduces the ring pucker energy landscape for these molecules, with a correlation coefficient r (2) of 0.83. …”
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4695por Abdul Nasir, Jamal, Guan, Jingcheng, Keal, Thomas W., Desmoutier, Alec W., Lu, You, Beale, Andrew M., Catlow, C. Richard A., Sokol, Alexey A.“…Here, we study the NH(3)-SCR reaction mechanism on Cu-CHA using the hybrid quantum mechanical/molecular mechanical (QM/MM) technique and investigate the effects of solvent on the reactivity of active Cu species. …”
Publicado 2022
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4696por Kabir, Mohammad Pabel, Ouedraogo, Daniel, Orozco-Gonzalez, Yoelvis, Gadda, Giovanni, Gozem, Samer“…Guided by previously reported electrostatic spectral tunning maps (ESTMs) of the flavin cofactor and by quantum mechanical/molecular mechanical (QM/MM) calculations reported in this work, we suggest an alternative strategy: placing a negatively charged amino acid near flavin’s N1 atom. …”
Publicado 2023
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4697por Rivera, Nicholas, Sloan, Jamison, Salamin, Yannick, Joannopoulos, John D., Soljačić, Marin“…The quantization of the electromagnetic field leads directly to the existence of quantum mechanical states, called Fock states, with an exact integer number of photons. …”
Publicado 2023
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4698“…By reducing the side chain length of Nle(εNHCOCF(2)X) to Abu(γNHCOCF(2)X) as control experiments and through quantum mechanical calculations, we suggest that the observed affinity enhancement is related to halogen bond-induced intramolecular stabilization of the α-helical binding mode of the peptide or a direct interaction with His54 in human Mdm4.…”
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4699por Nurtay, Lazzat, Benassi, Enrico, Nazir, Faisal, Dastan, Dana, Utupova, Assem, Dautov, Adilet, Dukenbayev, Kanat, Xie, Yingqiu, Pham, Tri T., Fan, Haiyan“…The chemical interaction between SN-CNPs and phospholipid modeled using quantum mechanical calculations further support our hypothesis that the phosphatase and antimicrobial properties of SN-CNPs are due to the thiol group on the SN-CNPs, which is a mimic of the cysteine-based protein phosphatase. …”
Publicado 2023
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4700por Smith, Matthew S., Knight, Ian S., Kormos, Rian C., Pepe, Joseph G., Kunach, Peter, Diamond, Marc I., Shahmoradian, Sarah H., Irwin, John J., DeGrado, William F., Shoichet, Brian K.“…We can check these geometries and energies using an implementation of ANI, a neural network-based quantum-mechanical evaluation of the ligand stacking energies. …”
Publicado 2023
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