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1021por Olivero, Eric, Gawronska, Elzbieta, Manimuda, Praveena, Jivani, Devyani, Chaggan, Faemia Zullfikar, Corey, Zachary, de Almeida, Thaicia Stona, Kaplan-Bie, Jessica, McIntyre, Gavin, Wodo, Olga, Nalam, Prathima C.“…Gradient porous structures (GPS) are characterized by structural variations along a specific direction, leading to enhanced mechanical and functional properties compared to homogeneous structures. …”
Publicado 2023
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1022“…A hierarchical and multidimensional database has been set up that currently classifies 105 950 loop fragments and loop flanking secondary structures. Besides the length of the loops and types of bracing secondary structures the database is organized along four internal coordinates, a distance and three types of angles characterizing the geometry of stem regions. …”
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1023“…The Berkeley Phylogenomics Group presents PhyloFacts, a structural phylogenomic encyclopedia containing almost 10,000 'books' for protein families and domains, with pre-calculated structural, functional and evolutionary analyses. …”
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1024por Jin, Ai-Hua, Brandstaetter, Hemma, Nevin, Simon T, Tan, Chia Chia, Clark, Richard J, Adams, David J, Alewood, Paul F, Craik, David J, Daly, Norelle L“…This study thus highlights the influence of the disulfide connectivity of BuIA on the dynamics of the three-dimensional structure.…”
Publicado 2007
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1025Publicado 1980“…The potential loci of the force-generating protein(s) are discussed as well as implications of the axostyle's structure on general microtubule function.…”
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1026“…In protein research, structural classifications of protein domains provided by databases such as SCOP play an important role. …”
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1027“…RESULTS: In this study, we explore the induced fit modifications on a set of 124 proteins available in both bound and unbound forms, in terms of local structure. The local structure is described thanks to a structural alphabet of 27 structural letters that allows a detailed description of the backbone. …”
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1029por Punta, Marco, Love, James, Handelman, Samuel, Hunt, John F., Shapiro, Lawrence, Hendrickson, Wayne A., Rost, Burkhard“…The New York Consortium on Membrane Protein Structure (NYCOMPS), a part of the Protein Structure Initiative (PSI) in the USA, has as its mission to establish a high-throughput pipeline for determination of novel integral membrane protein structures. …”
Publicado 2009
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1031por Konagurthu, Arun S., Reboul, Cyril F., Schmidberger, Jason W., Irving, James A., Lesk, Arthur M., Stuckey, Peter J., Whisstock, James C., Buckle, Ashley M.“…BACKGROUND: A central tenet of structural biology is that related proteins of common function share structural similarity. …”
Publicado 2010
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1032“…To address this, we propose creating a structured digital table as part of an overall effort in developing machine-readable, structured digital literature. …”
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1033“…During the past decade, the Protein Structure Initiative (PSI) centres have become major contributors of new families, superfamilies and folds to the Structural Classification of Proteins (SCOP) database. …”
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1034por Cuff, Alison L., Sillitoe, Ian, Lewis, Tony, Clegg, Andrew B., Rentzsch, Robert, Furnham, Nicholas, Pellegrini-Calace, Marialuisa, Jones, David, Thornton, Janet, Orengo, Christine A.“…CATH version 3.3 (class, architecture, topology, homology) contains 128 688 domains, 2386 homologous superfamilies and 1233 fold groups, and reflects a major focus on classifying structural genomics (SG) structures and transmembrane proteins, both of which are likely to add structural novelty to the database and therefore increase the coverage of protein fold space within CATH. …”
Publicado 2011
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1035“…BACKGROUND: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeling of protein complexes and conformational changes), molecular replacement, or annotation by structural similarity. …”
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1036por Gabanyi, Margaret J., Adams, Paul D., Arnold, Konstantin, Bordoli, Lorenza, Carter, Lester G., Flippen-Andersen, Judith, Gifford, Lida, Haas, Juergen, Kouranov, Andrei, McLaughlin, William A., Micallef, David I., Minor, Wladek, Shah, Raship, Schwede, Torsten, Tao, Yi-Ping, Westbrook, John D., Zimmerman, Matthew, Berman, Helen M.“…The Protein Structure Initiative’s Structural Biology Knowledgebase (SBKB, URL: http://sbkb.org) is an open web resource designed to turn the products of the structural genomics and structural biology efforts into knowledge that can be used by the biological community to understand living systems and disease. …”
Publicado 2011
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1037por Oliveira, Tânia F., Franklin, Edward, Afonso, José P., Khan, Amir R., Oldham, Neil J., Pereira, Inês A. C., Archer, Margarida“…The desulforubidin (Drub) structure is assembled as α(2)β(2)γ(2), in which two DsrC proteins are bound to the core [DsrA](2)[DsrB](2) unit, as reported for the desulfoviridin (Dvir) structure from Desulfovibrio vulgaris. …”
Publicado 2011
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1038“…RNA structural motifs are the building blocks of the complex RNA architecture. …”
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1039por Smart, Oliver S., Womack, Thomas O., Flensburg, Claus, Keller, Peter, Paciorek, Włodek, Sharff, Andrew, Vonrhein, Clemens, Bricogne, Gérard“…Maximum-likelihood X-ray macromolecular structure refinement in BUSTER has been extended with restraints facilitating the exploitation of structural similarity. …”
Publicado 2012
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1040SAS-Pro: Simultaneous Residue Assignment and Structure Superposition for Protein Structure Alignment“…Protein structure alignment is the problem of determining an assignment between the amino-acid residues of two given proteins in a way that maximizes a measure of similarity between the two superimposed protein structures. …”
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