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6821“…In-silico analysis was performed using SNP and Variation Suite® software. RESULTS: The amplicons covered approximately 90% of the target sequence. …”
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6822por Pathak, Ashish, Chauhan, Ashvini, Stothard, Paul, Green, Stefan, Maienschein-Cline, Mark, Jaswal, Rajneesh, Seaman, John“…Several gene homologues coding for resistance to heavy metals/radionuclides were identified in strain SRS-W-2-2016, such as a suite of outer membrane efflux pump proteins similar to nickel/cobalt transporter regulators, peptide/nickel transport substrate and ATP-binding proteins, permease proteins, and a high-affinity nickel-transport protein. …”
Publicado 2017
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6823por Veija, Tuukka, Koljonen, Virve, Bohling, Tom, Kero, Mia, Knuutila, Sakari, Sarhadi, Virinder Kaur“…Sequencing data were processed using Torrent Suite™ Software. Expression profiles of MCV-negative and MCV-positive tumors were compared. …”
Publicado 2017
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6824por Posma, Joram M., Garcia-Perez, Isabel, Heaton, James C., Burdisso, Paula, Mathers, John C., Draper, John, Lewis, Matt, Lindon, John C., Frost, Gary, Holmes, Elaine, Nicholson, Jeremy K.“…We exemplify these strategies using study data collected as part of a dietary intervention to improve health and which elicits a relatively subtle suite of changes from complex molecular profiles. …”
Publicado 2017
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6825“…Once introduced into a new region, secondary dispersal is limited by the physiology of the organism in relation to the ambient environment and by complex interactions between a suite of ecological factors such as presence of predators, competitors, and parasites. …”
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6826“…The integrated TIM/MCnest model was used to assess the relative risk of 12 insecticides applied via aerial spray to control corn pests on a suite of 31 avian species known to forage in cornfields in agroecosystems of the Midwest, USA. …”
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6827por Marvel, Skylar W., Rotroff, Daniel M., Wagner, Michael J., Buse, John B., Havener, Tammy M., McLeod, Howard L., Motsinger-Reif, Alison A.“…Rare variant (RV) associations (MAF < 3%) were conducted using a suite of methods that collapse multiple RV within individual genes. …”
Publicado 2017
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6828“…RESULTS: We propose shinyheatmap: an advanced user-friendly heatmap software suite capable of efficiently creating highly customizable static and interactive biological heatmaps in a web browser. shinyheatmap is a low memory footprint program, making it particularly well-suited for the interactive visualization of extremely large datasets that cannot typically be computed in-memory due to size restrictions. …”
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6829por Xu, Jing, Chen, Lin, Dai, Ya-Wei, Cao, Qian, Sun, Qing-Qing, Ding, Shi-Jin, Zhu, Hao, Zhang, David Wei“…Moreover, MoS(2) and ReS(2) photodetectors fabricated on the basis of the scheme have impressively leading photoresponsivities of 4000 and 760 A W(−1) in the depletion area, respectively, and both have exceeded 10(6) A W(−1) in the accumulation area, which is the best ever obtained. This opens up a suite of applications of this novel platform in 2D materials research with increasing needs of enhanced gate control.…”
Publicado 2017
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6830por Makarev, Eugene, Schubert, Adrian D, Kanherkar, Riya R, London, Nyall, Teka, Mahder, Ozerov, Ivan, Lezhnina, Ksenia, Bedi, Atul, Ravi, Rajani, Mehra, Rannee, Hoque, Mohammad O, Sloma, Ido, Gaykalova, Daria A, Csoka, Antonei B, Sidransky, David, Zhavoronkov, Alex, Izumchenko, Evgeny“…Here, we applied in silico Pathway Activation Network Decomposition Analysis (iPANDA), a new bioinformatics software suite for qualitative analysis of intracellular signaling pathway activation using transcriptomic data, to assess a network of molecular signaling in OSCC and pre-neoplastic oral lesions. …”
Publicado 2017
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6831por Mekhdjian, Armen H., Kai, FuiBoon, Rubashkin, Matthew G., Prahl, Louis S., Przybyla, Laralynne M., McGregor, Alexandra L., Bell, Emily S., Barnes, J. Matthew, DuFort, Christopher C., Ou, Guanqing, Chang, Alice C., Cassereau, Luke, Tan, Steven J., Pickup, Michael W., Lakins, Jonathan N., Ye, Xin, Davidson, Michael W., Lammerding, Jan, Odde, David J., Dunn, Alexander R., Weaver, Valerie M.“…Basal-like nonmalignant mammary epithelial cells also display an altered integrin adhesion molecular organization at the nanoscale and recruit a suite of paxillin-associated proteins implicated in invasion and metastasis. …”
Publicado 2017
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6832por Fishilevich, Simon, Nudel, Ron, Rappaport, Noa, Hadar, Rotem, Plaschkes, Inbar, Iny Stein, Tsippi, Rosen, Naomi, Kohn, Asher, Twik, Michal, Safran, Marilyn, Lancet, Doron, Cohen, Dana“…GeneHancer predictions are fully integrated in the widely used GeneCards Suite, whereby candidate enhancers and their annotations are displayed on every relevant GeneCard. …”
Publicado 2017
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6833“…Given these developments, our group sought to move the procedure from the main operating suite where they have traditionally been performed. …”
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6834por Fritzsche, Marco, Fernandes, Ricardo A., Chang, Veronica T., Colin-York, Huw, Clausen, Mathias P., Felce, James H., Galiani, Silvia, Erlenkämper, Christoph, Santos, Ana M., Heddleston, John M., Pedroza-Pacheco, Isabela, Waithe, Dominic, de la Serna, Jorge Bernardino, Lagerholm, B. Christoffer, Liu, Tsung-li, Chew, Teng-Leong, Betzig, Eric, Davis, Simon J., Eggeling, Christian“…However, important details on the involvement of actin in the latter transport processes are missing. Using a suite of advanced optical microscopes to analyze resting and activated T cells, we show that, following contact formation with activating surfaces, these cells sequentially rearrange their cortical actin across the entire cell, creating a previously unreported ramifying actin network above the immunological synapse. …”
Publicado 2017
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6835“…RESULTS: An algorithm to identify prognostic disease markers is devised and implemented as novel software called LDMAS. LDMAS is a software suite designed for data retrieval, management and integrated analysis of the clinico-pathological data and molecular results from independent databases. …”
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6836por Miller, Kristina M., Günther, Oliver P., Li, Shaorong, Kaukinen, Karia H., Ming, Tobi J.“…Moreover, we show that there is considerable overlap in the biomarkers resolved in our study in salmon with those based on similar human viral influenza research, suggesting a highly conserved suite of host genes associated with viral disease that may be applicable across a broad range of vertebrate taxa.…”
Publicado 2017
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6837“…The two putative spawning groups were genetically evaluated using a powerful microsatellite marker suite to determine if they are genetically distinct. …”
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6838por Wang, Yinxue, Shi, Guilai, Miller, David J., Wang, Yizhi, Wang, Congchao, Broussard, Gerard, Wang, Yue, Tian, Lin, Yu, Guoqiang“…Current practice is essentially manual, which not only limits analysis throughput but also risks introducing bias and missing important information latent in complex, dynamic big data. Here, we report a suite of computational tools, called Functional AStrocyte Phenotyping (FASP), for automatically quantifying the functional status of astrocytes. …”
Publicado 2017
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6839por Omidi, Saeed, Zavolan, Mihaela, Pachkov, Mikhail, Breda, Jeremie, Berger, Severin, van Nimwegen, Erik“…Finally, we show that DWTs inferred from ChIP-seq data also outperform PSWMs on HT-SELEX data for the same TF, suggesting that DWTs capture inherent biophysical properties of the interactions between the DNA binding domains of TFs and their binding sites. We make a suite of DWT tools available at dwt.unibas.ch, that allow users to automatically perform ‘motif finding’, i.e. the inference of DWT motifs from a set of sequences, binding site prediction with DWTs, and visualization of DWT ‘dilogo’ motifs.…”
Publicado 2017
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6840“…Our findings suggest that a suite of factors, including rare adaptive introgression, may be necessary for adaptive radiation in addition to ecological opportunity.…”
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