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7461por Hürlimann, Eveline, Yapi, Richard B, Houngbedji, Clarisse A, Schmidlin, Thomas, Kouadio, Bernadette A, Silué, Kigbafori D, Ouattara, Mamadou, N’Goran, Eliézer K, Utzinger, Jürg, Raso, Giovanna“…METHODS: Between August and September 2011, two purposely selected rural communities in southern Côte d’Ivoire were screened for helminth, intestinal protozoa and Plasmodium infection, using a suite of quality-controlled diagnostic methods. Additionally, participants were examined clinically and we measured haemoglobin level, height, weight and mid-upper arm circumference to determine nutritional status. …”
Publicado 2014
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7462por Acland, Abigail, Agarwala, Richa, Barrett, Tanya, Beck, Jeff, Benson, Dennis A., Bollin, Colleen, Bolton, Evan, Bryant, Stephen H., Canese, Kathi, Church, Deanna M., Clark, Karen, DiCuccio, Michael, Dondoshansky, Ilya, Federhen, Scott, Feolo, Michael, Geer, Lewis Y., Gorelenkov, Viatcheslav, Hoeppner, Marilu, Johnson, Mark, Kelly, Christopher, Khotomlianski, Viatcheslav, Kimchi, Avi, Kimelman, Michael, Kitts, Paul, Krasnov, Sergey, Kuznetsov, Anatoliy, Landsman, David, Lipman, David J., Lu, Zhiyong, Madden, Thomas L., Madej, Tom, Maglott, Donna R., Marchler-Bauer, Aron, Karsch-Mizrachi, Ilene, Murphy, Terence, Ostell, James, O'Sullivan, Christopher, Panchenko, Anna, Phan, Lon, Pruitt, Don Preussm Kim D., Rubinstein, Wendy, Sayers, Eric W., Schneider, Valerie, Schuler, Gregory D., Sequeira, Edwin, Sherry, Stephen T., Shumway, Martin, Sirotkin, Karl, Siyan, Karanjit, Slotta, Douglas, Soboleva, Alexandra, Soussov, Vladimir, Starchenko, Grigory, Tatusova, Tatiana A., Trawick, Bart W., Vakatov, Denis, Wang, Yanli, Ward, Minghong, John Wilbur, W., Yaschenko, Eugene, Zbicz, Kerry“…NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, PubReader, Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link, Primer-BLAST, COBALT, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, the Genetic Testing Registry, Genome and related tools, the Map Viewer, Trace Archive, Sequence Read Archive, BioProject, BioSample, ClinVar, MedGen, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Probe, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. …”
Publicado 2014
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7463por Omoyinmi, Ebun, Melo Gomes, Sónia, Standing, Ariane, Rowczenio, Dorota M, Eleftheriou, Despina, Klein, Nigel, Aróstegui, Juan I, Lachmann, Helen J, Hawkins, Philip N, Brogan, Paul A“…Exome data were analyzed in the Galaxy Web-based suite. Whole-exome sequencing findings were confirmed by massively parallel sequencing. …”
Publicado 2014
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7464“…METHODS: In this work the efficacy of supervised machine learning methods to classify species with DNA Barcode sequences is shown. The Weka software suite, which includes a collection of supervised classification methods, is adopted to address the task of DNA Barcode analysis. …”
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7465por FANG, WEIJIA, RADOVICH, MILAN, ZHENG, YULONG, FU, CAI-YUN, ZHAO, PENG, MAO, CHENGYU, ZHENG, YI, ZHENG, SHUSEN“…The sequencing results were then analyzed using the Ampliseq™ Variant Caller plug-in within the Ion Torrent Suite software. In addition, Ingenuity Pathway software was used to perform a pathway analysis. …”
Publicado 2014
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7466por Romero, Roberto, Hassan, Sonia S, Gajer, Pawel, Tarca, Adi L, Fadrosh, Douglas W, Bieda, Janine, Chaemsaithong, Piya, Miranda, Jezid, Chaiworapongsa, Tinnakorn, Ravel, Jacques“…We tested the hypothesis of whether the relative abundance of individual microbial species (phylotypes) was different between women who had a term versus preterm delivery. A suite of bioinformatic and statistical tools, including linear mixed effects models and generalized estimating equations, was used. …”
Publicado 2014
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7467por Hachimi, Abdelhamid, Elkhayari, Mina, Chaibi, Ibtissam, Razine, Rachid, Ziadi, Amra, Samkaoui, Mohamed Abdenasser“…La mortalité était de 52,2% des cas (36 patients) suite à une souffrance cérébrale dans 74,3% des cas (26 patients). …”
Publicado 2014
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7468“…It is generally accepted that a single 1D NMR spectrum or mass spectrum is usually not sufficient to establish the identity of a hitherto unknown compound. When a suite of spectra from 1D and 2D NMR experiments supplemented with a molecular formula are available, the successful elucidation of the chemical structure for candidates with up to 30 heavy atoms has been reported previously by one of the authors. …”
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7469“…Furthermore, viruses were shown to exploit the host miRNA networks to suite their own need. The complex cross-talk between host and viral miRNAs and their cellular and viral targets forms the environment for viral pathogenesis. …”
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7470por Wilkins, Michael J., Hoyt, David W., Marshall, Matthew J., Alderson, Paul A., Plymale, Andrew E., Markillie, L. Meng, Tucker, Abby E., Walter, Eric D., Linggi, Bryan E., Dohnalkova, Alice C., Taylor, Ron C.“…The combined effects of pressurized CO(2) on a model sulfate-reducing microorganism, Desulfovibrio vulgaris, have been assessed using a suite of genomic and kinetic measurements. Novel high-pressure NMR time-series measurements using (13)C-lactate were used to track D. vulgaris metabolism. …”
Publicado 2014
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7471“…Assessing CR requires a suite of tools to encompass a wide scope of contexts and cognitive abilities. …”
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7472por Cano, Jorge, Rebollo, Maria P, Golding, Nick, Pullan, Rachel L, Crellen, Thomas, Soler, Anna, Hope, Louise A Kelly-, Lindsay, Steve W, Hay, Simon I, Bockarie, Moses J, Brooker, Simon J“…METHODS: We undertook a systematic search and assembly of prevalence data worldwide and used a suite of environmental and climatic data and boosted regression trees (BRT) modelling to map the transmission limits of LF. …”
Publicado 2014
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7473por Lotan, Amit, Fenckova, Michaela, Bralten, Janita, Alttoa, Aet, Dixson, Luanna, Williams, Robert W., van der Voet, Monique“…The most widely shared subset of genes—common to five of six disorders–included ANK3, AS3MT, CACNA1C, CACNB2, CNNM2, CSMD1, DPCR1, ITIH3, NT5C2, PPP1R11, SYNE1, TCF4, TENM4, TRIM26, and ZNRD1. Using a suite of neuroinformatic resources, we showed that many of the shared genes are implicated in the postsynaptic density (PSD), expressed in immune tissues and co-expressed in developing human brain. …”
Publicado 2014
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7474por Clewell, Rebecca A., Sun, Bin, Adeleye, Yeyejide, Carmichael, Paul, Efremenko, Alina, McMullen, Patrick D., Pendse, Salil, Trask, O. J., White, Andy, Andersen, Melvin E.“…As part of a larger effort to provide proof-of-concept in vitro-only risk assessments, we have developed a suite of high-throughput assays for key readouts in the p53 DNA damage response toxicity pathway: double-strand break DNA damage (p-H2AX), permanent chromosomal damage (micronuclei), p53 activation, p53 transcriptional activity, and cell fate (cell cycle arrest, apoptosis, micronuclei). …”
Publicado 2014
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7475por Hassani, Fahd Derkaoui, Gana, Rachid, El Abbadi, Najia, El Fatemi, Nizare, Maaqili, Moulay Rachid“…Les patients sont souvent admis aux urgences suite au saignement de cette malformation angiomateuse. …”
Publicado 2014
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7476“…Séance combines the alignment extension and phylogenetic placement capabilities of the Pagan multiple sequence alignment program with a suite of tools to preprocess, cluster and visualise datasets composed of many samples. …”
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7477por Mateus, Ana Rita A, Marques-Pita, Manuel, Oostra, Vicencio, Lafuente, Elvira, Brakefield, Paul M, Zwaan, Bas J, Beldade, Patrícia“…RESULTS: We quantified the effect of temperature and ecdysone hormone manipulations on post-growth tissue patterning in an experimental model of adaptive developmental plasticity, the butterfly Bicyclus anynana. Following a suite of traits evolving by natural or sexual selection, we found that different groups of cells within the same tissue have sensitivities and patterns of response that are surprisingly distinct for the external environmental cue and for the internal hormonal signal. …”
Publicado 2014
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7478por Scully, Erin D, Geib, Scott M, Carlson, John E, Tien, Ming, McKenna, Duane, Hoover, Kelli“…The beetle gut microbiota also produce their own suite of transcripts that can enhance lignin degradation, degrade hemicellulose, and ferment xylose and wood sugars. …”
Publicado 2014
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7479por Muhanguzi, Dennis, Picozzi, Kim, Hattendorf, Jan, Thrusfield, Michael, Kabasa, John David, Waiswa, Charles, Welburn, Susan Christina“…Blood samples were taken from all cattle in the selected villages between September-December 2011; preserved on FTA cards and analysed for different trypanosomes using a suite of molecular techniques. Generalized estimating equation and Rogen-Gladen estimator models were used to calculate apparent and true prevalences of different trypanosomes while intra cluster correlations were estimated using a 1-way mixed effect analysis of variance (ANOVA) in R statistical software version 3.0.2. …”
Publicado 2014
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7480por Clarkson, Matthew J., Zombori, Gergely, Thompson, Steve, Totz, Johannes, Song, Yi, Espak, Miklos, Johnsen, Stian, Hawkes, David, Ourselin, Sébastien“…METHODS: A new messaging library called NiftyLink is introduced that uses the OpenIGTLink protocol and provides the user with easy-to-use asynchronous two-way messaging, high reliability and comprehensive error reporting. A small suite of applications called NiftyGuide has been developed, containing lightweight applications for grabbing data, currently from position trackers and ultrasound scanners. …”
Publicado 2014
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