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4141por Su, Shian, Tian, Luyi, Dong, Xueyi, Hickey, Peter F, Freytag, Saskia, Ritchie, Matthew E“…Our software has enabled comprehensive benchmarking of single-cell RNA-seq normalization, imputation, clustering, trajectory analysis and data integration methods using various performance metrics obtained from data with available ground truth. CellBench is also amenable to benchmarking other bioinformatics analysis tasks. …”
Publicado 2020
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4142por Abenojar, Eric C., Bederman, Ilya, de Leon, Al C., Zhu, Jinle, Hadley, Judith, Kolios, Michael C., Exner, Agata A.“…This measurement was then used as ground truth to test the accuracy of theoretical gas volume predictions based on RMM, NTA (for nanobubbles), and Coulter counter (for microbubbles) measurements. …”
Publicado 2020
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4143por Wright, Gabriel, Rodriguez, Anabel, Li, Jun, Clark, Patricia L., Milenković, Tijana, Emrich, Scott J.“…Here, we evaluate five models for their association with slowly translated positions as denoted by two independent ribosome footprint (RFP) count experiments from S. cerevisiae, because RFP data is often considered as a “ground truth” for translation rates across mRNA sequences. …”
Publicado 2020
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4144por Azarmehr, Neda, Ye, Xujiong, Howes, Joseph D., Docking, Benjamin, Howard, James P., Francis, Darrel P., Zolgharni, Massoud“…The proposed technique was evaluated using a publicly available synthetic echocardiographic dataset with known ground-truth from several major vendors and for healthy/ischaemic cases. …”
Publicado 2020
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4145por Prianichnikov, Nikita, Koch, Heiner, Koch, Scarlet, Lubeck, Markus, Heilig, Raphael, Brehmer, Sven, Fischer, Roman, Cox, Jürgen“…The missing value problem in protein quantification over many samples is greatly reduced by CCS aware MBR.MS1 level label-free quantification is also implemented which proves to be highly precise and accurate on a benchmark dataset with known ground truth. MaxQuant for LC-IMS-MS/MS is part of the basic MaxQuant release and can be downloaded from http://maxquant.org.…”
Publicado 2020
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4146“…We test an aspect-based network analysis model that computes sentiment about an entity from the shortest paths between the sentiment words and the target word across a corpus. Two ground-truth datasets in which human annotators judged whether tweets were positive or negative enabled testing the internal and external validity of the automated network-based method, evaluating the extent to which this approach’s scoring corresponds to the annotations. …”
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4147por Hofgartner, Jason D., Hayes, Alexander G., Campbell, Donald B., Lunine, Jonathan I., Black, Gregory J., MacKenzie, Shannon M., Birch, Samuel P. D., Elachi, Charles, Kirk, Randolph D., Le Gall, Alice, Lorenz, Ralph D., Wall, Stephen D.“…Titan observations provide ground-truth in the search for oceans on exoearths and an important lesson is that identifying liquid surfaces by specular reflections requires a stringent definition of specular; we propose a definition for this purpose.…”
Publicado 2020
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4148por Kuo, Tony C Y, Hatakeyama, Masaomi, Tameshige, Toshiaki, Shimizu, Kentaro K, Sese, Jun“…We examined mapping error using our previous and new RNA-seq data in which a subgenome is experimentally added (synthetic allotetraploid Arabidopsis kamchatica) or reduced (allohexaploid wheat Triticum aestivum versus extracted allotetraploid) as ground truth. The error rates in the two species were very similar. …”
Publicado 2018
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4149por Bannister, Jordan J., Crites, Sebastian R., Aponte, J. David, Katz, David C., Wilms, Matthias, Klein, Ophir D., Bernier, Francois P. J., Spritz, Richard A., Hallgrímsson, Benedikt, Forkert, Nils D.“…The landmarking algorithm was evaluated using a test set of 444 facial scans with ground truth landmarks identified by two different human observers. …”
Publicado 2020
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4150“…Deception is a form of manipulation aimed at misleading another person by conveying false or truthful messages. Manipulative truthful statements could be considered as sophisticated deception and elicit an increased cognitive load. …”
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4151por Weber, Cédric R, Akbar, Rahmad, Yermanos, Alexander, Pavlović, Milena, Snapkov, Igor, Sandve, Geir K, Reddy, Sai T, Greiff, Victor“…Currently, however, it remains challenging to create standardized ground truth immune receptor repertoires for immunoinformatics tool benchmarking. …”
Publicado 2020
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4152“…Three data sets comprising of easy, difficult, and real spike similarity with known ground-truth are chosen for assessment, ensuring a uniform testbed. …”
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4153“…More interestingly, the resulting base-pairing probabilities are even better correlated with the ground-truth structures. LinearPartition also leads to a small accuracy improvement when used for downstream structure prediction on families with the longest length sequences (16S and 23S rRNAs), as well as a substantial improvement on long-distance base pairs (500+ nt apart). …”
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4154por Rahmat, Roushanak, Brochu, Frederic, Li, Chao, Sinha, Rohitashwa, Price, Stephen John, Jena, Raj“…RESULTS: The expansion of tumour boundary from q map to p map is clearly visible in all cases and the Dice coefficient (DC) showed a mean similarity of 74% across all 50 patients between the manually segmented ground truth p map and the level set automatic segmentation. …”
Publicado 2020
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4155por Lo Giudice, Antonino, Quinzi, Vincenzo, Ronsivalle, Vincenzo, Farronato, Marco, Nicotra, Carmelo, Indelicato, Francesco, Isola, Gaetano“…The same models were also manually segmented (Mimics, version 17.01, Materialise, Leuven, Belgium) and set as ground truth. The accuracy of semi-automatic segmentation was evaluated by (1) comparing the volume of each semi-automatic 3D rendered condylar model with that obtained with manual segmentation, (2) deviation analysis of each 3D rendered mandibular models with those obtained from manual segmentation. …”
Publicado 2020
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4156“…Meta‐analytic research on 114 studies encompassing 3,307 participants (Suchotzki, Verschuere, Van Bockstaele, Ben‐Shakhar, & Crombez, 2017) suggests that computerized paradigms can reliably assess the cognitive burden of lying, with large reaction time differences between lying and truth telling. These studies, however, lack a key ingredient of real‐life deception, namely self‐initiated behavior. …”
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4157por Remelgado, Ruben, Zaitov, Sherzod, Kenjabaev, Shavkat, Stulina, Galina, Sultanov, Murod, Ibrakhimov, Mirzakhayot, Akhmedov, Mustakim, Dukhovny, Victor, Conrad, Christopher“…Here, remote sensing is valuable to map crop types, but its quality depends on consistent ground-truth data. Yet, in the ASB, such data are missing. …”
Publicado 2020
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4158por Schulz, Marc-Andre, Chapman-Rounds, Matt, Verma, Manisha, Bzdok, Danilo, Georgatzis, Konstantinos“…In multiple datasets with known ground-truth subclasses, particularly on UK Biobank brain imaging data and transcriptome data from the Cancer Genome Atlas, we show that cluster analysis on model explanations substantially outperforms the classical approach. …”
Publicado 2020
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4159por Bladt, Piet, van Osch, Matthias J. P., Clement, Patricia, Achten, Eric, Sijbers, Jan, den Dekker, Arnold J.“…METHODS: In a simulation framework, 5‐minute scan protocols with different scan time divisions between PCASL data acquisition and supporting measurements were evaluated in terms of CBF estimation variability across both noise and ground truth parameter realizations taken from the general population distribution. …”
Publicado 2020
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4160por Lo, Julian, Heisler, Morgan, Vanzan, Vinicius, Karst, Sonja, Matovinović, Ivana Zadro, Lončarić, Sven, Navajas, Eduardo V., Beg, Mirza Faisal, Šarunić, Marinko V.“…Multiple-volume acquisition and averaging enhanced the vasculature contrast used for constructing the ground truth for neural network training. We used transfer learning from a CNN trained on smaller FOVs of the SCP acquired using different OCT instruments. …”
Publicado 2020
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