“…The database is now built around a sophisticated genome browser (Ensembl), our own microarray information management and annotation system (MIMAS) used to extensively describe experimental data obtained with high-density oligonucleotide microarrays (GeneChips) and a comprehensive system for online editing of database entries (MediaWiki). The RNA data include results from classical microarrays as well as tiling arrays that yield information on RNA expression levels, transcript start sites and lengths as well as exon composition. …”
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“…The group developed four draft white papers, a wiki site, and a listserv. One major outcome of these meetings is this issue of CBE—Life Sciences Education, which resulted from proposals at our 2008 meeting and a January 2009 planning session. …”
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“…We then introduce some systems for collaborative document creation, including wiki systems and tools for ontology development, and review some of the most interesting biological wikis. …”
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“…Availability: https://bitbucket.org/baderlab/fast/downloads/FAST.tar.gz, with documentation at https://bitbucket.org/baderlab/fast/wiki/Home…”
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“…The new AMOEBA-aMD method is publicly available (http://wiki.simtk.org/openmm/VirtualRepository) and promises to be interesting for studying complex systems that can benefit from both the use of a polarizable force field and enhanced sampling.…”
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“…A tutorial and further information are available at https://sourceforge.net/p/rpore/wiki/Home/ Contact: mick.watson@roslin.ed.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…NEW INFORMATION: We describe two new species of microendemic New Guinea Limbodessus and use a compact descriptive format flanked by enriched online content in wiki powered species pages. Limbodessus baliem sp.n. is described from ca. 1,600 m altitude in the Baliem Valley of Papua and Limbodessus alexanderi sp.n. from >3,000 m altitude north of Sugapa, Papua. …”
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“…Additional documentation and video tutorials are available at https://github.com/baderzone/biopartsdb/wiki. An Amazon Web Services image is available from the AWS Market Place (ami-a01d07c8). …”
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“…AVAILABILITY AND IMPLEMENTATION: QuimP (http://warwick.ac.uk/quimp) is a set of Java plugins for Fiji/ImageJ (http://fiji.sc) installable through the Fiji Updater (http://warwick.ac.uk/quimp/wiki-pages/installation). It is compatible with Mac, Windows and Unix operating systems, requiring version >1.45 of ImageJ and Java 8. …”
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“…RESULTS: Experiments on the DBLP and WikiVote datasets verify the effectiveness and efficiency of our proposed algorithm. …”
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“…Last year ActinoBase, a Wiki-style initiative supported by the UK Microbiology Society, published a review highlighting the research of particular interest to the actinomycete community. …”
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“…The basic organizational principle for mitotic chromosomes is specific coiling of the 11-nm nucleosome fiber into large scale, ∼200-nm interphase structures, a Slinky [https://en.wikipedia.org/wiki/Slinky; motif cited in S. Bowerman et al., eLife 10, e65587 (2021)], then further modified with subsequent additional coiling for the final mitotic chromosome structure. …”
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“… [1] AARC Blueprint for Community AAIs: https://aarc-project.eu/architecture/ [2] CS3 contribution 2021: https://indico.cern.ch/event/970232/contributions/4157924/ [3] CS3 contribution 2022: https://indico.cern.ch/event/1075584/contributions/4658939/ [4] SCIM rfc: https://www.rfc-editor.org/rfc/rfc7644.html [5] OCM protocol: https://wiki.geant.org/display/OCM/Open+Cloud+Mesh…”
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“…Recommendations that can be used for experimentalist users, as well as educators, are provided and integrated within a customized, publicly accessible Wiki.…”
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“…Gene ontology analysis was performed using WikiPaths for each cataract subtype. Seven pediatric patients and ten adult patients were included in the study. …”
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“…Using network data from 910 artifacts (the WikiProject Aquarium Fishes articles) over 163 weeks, two studies were designed to understand how collaboration network traits drive population and artifact-level knowledge evolution. …”
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“…DESCRIPTION: We built on the recent advances in Wiki-based technologies to develop a collaborative knowledge base and gene prioritization portal aimed at mapping genes and genomic regions, and untangling their relations with corresponding human phenotypes, congenital heart defects (CHDs). …”
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“…The SOAP services, available at http://www.g-language.org/wiki/soap/, provide language-independent programmatic access to 77 analysis programs. …”
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“…RESULTS: To address this issue we have developed TOPSAN, The Open Protein Structure Annotation Network, a web-based platform that combines the openness of the wiki model with the quality control of scientific communication. …”
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“…The database architecture combines SGN-specific schemas and the community-developed Chado schema (http://gmod.org/wiki/Chado) for compatibility with other genome databases. …”
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