Enzyme-constrained metabolic model and in silico metabolic engineering of Clostridium ljungdahlii for the development of sustainable production processes

por Caivano, Antonio, van Winden, Wouter, Dragone, Giuliano, Mussatto, Solange I.
Publicado 2023

Caffeine causes cell cycle arrest at G0/G1 and increases of ubiquitinated proteins, ATP and mitochondrial membrane potential in renal cells

por Kanlaya, Rattiyaporn, Subkod, Chonnicha, Nanthawuttiphan, Supanan, Thongboonkerd, Visith
Publicado 2023

Biological informed graph neural network for tumor mutation burden prediction and immunotherapy-related pathway analysis in gastric cancer

por Liu, Chuwei, Wan, Arabella H., Liang, Heng, Sun, Lei, Li, Jiarui, Yang, Ranran, Li, Qinghai, Wu, Ruibo, Hu, Kunhua, Yang, Yuedong, Cai, Shirong, Wan, Guohui, He, Weiling
Publicado 2023

Benchmarking of human Y-chromosomal haplogroup classifiers with whole-genome and whole-exome sequence data

por García-Olivares, Víctor, Muñoz-Barrera, Adrián, Rubio-Rodríguez, Luis A., Jáspez, David, Díaz-de Usera, Ana, Iñigo-Campos, Antonio, Veeramah, Krishna R., Alonso, Santos, Thomas, Mark G., Lorenzo-Salazar, José M., González-Montelongo, Rafaela, Flores, Carlos
Publicado 2023

An immune and epigenetics-related scoring model and drug candidate prediction for hepatic carcinogenesis via dynamic network biomarker analysis and connectivity mapping

por Hu, Yuting, Zhang, Xingli, Li, Qingya, Zhou, Qianmei, Fang, Dongdong, Lu, Yiyu
Publicado 2023

W254 in furin functions as a molecular gate promoting anti-viral drug binding: Elucidation of putative drug tunneling and docking by non-equilibrium molecular dynamics

por Ridgway, Harry, Orbell, John D., Matsoukas, Minos-Timotheos, Kelaidonis, Konstantinos, Moore, Graham J., Tsiodras, Sotiris, Gorgoulis, Vasilis G., Chasapis, Christos T., Apostolopoulos, Vasso, Matsoukas, John M.
Publicado 2023

ASCARIS: Positional feature annotation and protein structure-based representation of single amino acid variations

por Cankara, Fatma, Doğan, Tunca
Publicado 2023

Thyroxine metabolite-derived 3-iodothyronamine (T1AM) and synthetic analogs as efficient suppressors of transthyretin amyloidosis

por Kim, Bokyung, Ko, Young Ho, Si, Jinbeom, Na, Jongbum, Ortore, Gabriella, Chiellini, Grazia, Kim, Jin Hae
Publicado 2023

TOAST: A novel method for identifying topologically associated domains based on graph auto-encoders and clustering()

por Gong, Haiyan, Zhang, Dawei, Zhang, Xiaotong
Publicado 2023

Biomarker discovery process at binomial decision point (2BDP): Analytical pipeline to construct biomarker panel

por Chakraborty, Nabarun, Lawrence, Alexander, Campbell, Ross, Yang, Ruoting, Hammamieh, Rasha
Publicado 2023

Involving patients in the process: Development of a constipation patient-reported outcome measure for symptoms and quality of life

por Lee, V Vien, Lau, Ni Yin, Blasiak, Agata, Siah, Kewin Tien Ho, Ho, Dean
Publicado 2023

Applying the digital data and the bioinformatics tools in SARS-CoV-2 research

por Tan, Meng, Xia, Jiaxin, Luo, Haitao, Meng, Geng, Zhu, Zhenglin
Publicado 2023

CCLHunter: An efficient toolkit for cancer cell line authentication

por Bu, Congfan, Zheng, Xinchang, Mai, Jialin, Nie, Zhi, Zeng, Jingyao, Qian, Qiheng, Xu, Tianyi, Sun, Yanling, Bao, Yiming, Xiao, Jingfa
Publicado 2023

Comprehensive genomic analysis of Bacillus paralicheniformis strain BP9, pan-genomic and genetic basis of biocontrol mechanism

por Asif, Muhammad, Li-Qun, Zhang, Zeng, Qingchao, Atiq, Muhammad, Ahmad, Khalil, Tariq, Aqil, Al-Ansari, Nadhir, Blom, Jochen, Fenske, Linda, Alodaini, Hissah Abdulrahman, Hatamleh, Ashraf Atef
Publicado 2023

Exploring the landscape of tools and resources for the analysis of long non-coding RNAs

por Ballarino, Monica, Pepe, Gerardo, Helmer-Citterich, Manuela, Palma, Alessandro
Publicado 2023

TWN-FS method: A novel fragment screening method for drug discovery

por Yoon, Hye Ree, Park, Gyoung Jin, Balupuri, Anand, Kang, Nam Sook
Publicado 2023

Evaluation of zero counts to better understand the discrepancies between bulk and single-cell RNA-Seq platforms

por Zyla, Joanna, Papiez, Anna, Zhao, Jun, Qu, Rihao, Li, Xiaotong, Kluger, Yuval, Polanska, Joanna, Hatzis, Christos, Pusztai, Lajos, Marczyk, Michal
Publicado 2023

Data pre-processing for analyzing microbiome data – A mini review

por Zhou, Ruwen, Ng, Siu Kin, Sung, Joseph Jao Yiu, Goh, Wilson Wen Bin, Wong, Sunny Hei
Publicado 2023

Beyond structural bioinformatics for genomics with dynamics characterization of an expanded KRAS mutational landscape

por Ratnasinghe, Brian D., Haque, Neshatul, Wagenknecht, Jessica B., Jensen, Davin R., Valdivia Esparza, Guadalupe K., Leverence, Elise N., Milech De Assuncao, Thiago, Mathison, Angela J., Lomberk, Gwen, Smith, Brian C., Volkman, Brian F., Urrutia, Raul, Zimmermann, Michael T.
Publicado 2023

The effect of estrogen therapy on cerebral metabolism in diabetic female rats

por Wu, Chun-Yi, Lin, Yu-Hsin, Hsieh, Hsin-Hua, Chung, Yi-Hsiu, Hsu, Shih-Ting, Peng, Shin-Lei
Publicado 2023