Pests, diseases, and aridity have shaped the genome of Corymbia citriodora

por Healey, Adam L., Shepherd, Mervyn, King, Graham J., Butler, Jakob B., Freeman, Jules S., Lee, David J., Potts, Brad M., Silva-Junior, Orzenil B., Baten, Abdul, Jenkins, Jerry, Shu, Shengqiang, Lovell, John T., Sreedasyam, Avinash, Grimwood, Jane, Furtado, Agnelo, Grattapaglia, Dario, Barry, Kerrie W., Hundley, Hope, Simmons, Blake A., Schmutz, Jeremy, Vaillancourt, René E., Henry, Robert J.
Publicado 2021

Monitoring of chronic wasting disease (CWD) (IV)

por Koutsoumanis, Konstantinos, Allende, Ana, Alvarez‐Ordoñez, Avelino, Bolton, Declan, Bover‐Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Herman, Lieve, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Peixe, Luisa, Skandamis, Panagiotis, Suffredini, Elisabetta, Miller, Michael W, Mysterud, Atle, Nöremark, Maria, Simmons, Marion, Tranulis, Michael A, Vaccari, Gabriele, Viljugrein, Hildegunn, Ortiz‐Pelaez, Angel, Ru, Giuseppe
Publicado 2023

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

por van Munster, Jolanda M., Daly, Paul, Blythe, Martin J., Ibbett, Roger, Kokolski, Matt, Gaddipati, Sanyasi, Lindquist, Erika, Singan, Vasanth R., Barry, Kerrie W., Lipzen, Anna, Ngan, Chew Yee, Petzold, Christopher J., Chan, Leanne Jade G., Arvas, Mikko, Raulo, Roxane, Pullan, Steven T., Delmas, Stéphane, Grigoriev, Igor V., Tucker, Gregory A., Simmons, Blake A., Archer, David B.
Publicado 2020

Experimental Verification of Inferred Regulatory Interactions of EARLY FLOWERING 3 ( GmELF3-1 ) in Glycine max

por Alcantara, Michelle, Acosta, Patrick, Azatian, Ara, Calderon, Carlos, Candray, Kevin, Castillo, Natalie, Coria-Gomez, Luis, Duran, Jose, Fam, Justina, Hernandez-Segura, Diego, Hidalgo, Lennix, Huerta, Carlos, Jordan, Shane, Kagan, Kimberly, Loya, Karla, Martinez, Eduardo, Musaev, Kirill, Navarro, Roxana, Nazarians, Narek, Paglia, Robert, Robles, Gabriela, Simmons, Taylor, Smith, Shawn, Soudani, Faisel, Valenzuela, Emily, Villalobos, Jessica, Iftikhar, Hira, Hanzawa, Yoshie
Publicado 2022

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

por Ye, Chun Jimmie, Chen, Jenny, Villani, Alexandra-Chloé, Gate, Rachel E., Subramaniam, Meena, Bhangale, Tushar, Lee, Mark N., Raj, Towfique, Raychowdhury, Raktima, Li, Weibo, Rogel, Noga, Simmons, Sean, Imboywa, Selina H., Chipendo, Portia I., McCabe, Cristin, Lee, Michelle H., Frohlich, Irene Y., Stranger, Barbara E., De Jager, Philip L., Regev, Aviv, Behrens, Tim, Hacohen, Nir
Publicado 2018

Genomic sequencing identifies secondary findings in a cohort of parent study participants

por Thompson, Michelle L., Finnila, Candice R., Bowling, Kevin M., Brothers, Kyle B., Neu, Matthew B., Amaral, Michelle D., Hiatt, Susan M., East, Kelly M., Gray, David E., Lawlor, James M.J., Kelley, Whitley V., Lose, Edward J., Rich, Carla A., Simmons, Shirley, Levy, Shawn E., Myers, Richard M., Barsh, Gregory S., Bebin, E. Martina, Cooper, Gregory M.
Publicado 2018

Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms

por Koutsoumanis, Kostas, Allende, Ana, Alvarez‐Ordóñez, Avelino, Bolton, Declan, Bover‐Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Peixe, Luisa, Ru, Giuseppe, Simmons, Marion, Skandamis, Panagiotis, Suffredini, Elisabetta, Jenkins, Claire, Malorny, Burkhard, Ribeiro Duarte, Ana Sofia, Torpdahl, Mia, da Silva Felício, Maria Teresa, Guerra, Beatriz, Rossi, Mirko, Herman, Lieve
Publicado 2019

CSF1R inhibitor JNJ-40346527 attenuates microglial proliferation and neurodegeneration in P301S mice

por Mancuso, Renzo, Fryatt, Gemma, Cleal, Madeleine, Obst, Juliane, Pipi, Elena, Monzón-Sandoval, Jimena, Ribe, Elena, Winchester, Laura, Webber, Caleb, Nevado, Alejo, Jacobs, Tom, Austin, Nigel, Theunis, Clara, Grauwen, Karolien, Daniela Ruiz, Eva, Mudher, Amrit, Vicente-Rodriguez, Marta, Parker, Christine A, Simmons, Camilla, Cash, Diana, Richardson, Jill, Jones, Declan N C, Lovestone, Simon, Gómez-Nicola, Diego, Perry, V Hugh
Publicado 2019

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

por Xu, Ling, Naylor, Dan, Dong, Zhaobin, Simmons, Tuesday, Pierroz, Grady, Hixson, Kim K., Kim, Young-Mo, Zink, Erika M., Engbrecht, Kristin M., Wang, Yi, Gao, Cheng, DeGraaf, Stephanie, Madera, Mary A., Sievert, Julie A., Hollingsworth, Joy, Birdseye, Devon, Scheller, Henrik V., Hutmacher, Robert, Dahlberg, Jeffery, Jansson, Christer, Taylor, John W., Lemaux, Peggy G., Coleman-Derr, Devin
Publicado 2018

Role played by the environment in the emergence and spread of antimicrobial resistance (AMR) through the food chain

por Koutsoumanis, Konstantinos, Allende, Ana, Álvarez‐Ordóñez, Avelino, Bolton, Declan, Bover‐Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Herman, Lieve, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Ru, Giuseppe, Simmons, Marion, Skandamis, Panagiotis, Suffredini, Elisabetta, Argüello, Héctor, Berendonk, Thomas, Cavaco, Lina Maria, Gaze, William, Schmitt, Heike, Topp, Ed, Guerra, Beatriz, Liébana, Ernesto, Stella, Pietro, Peixe, Luisa
Publicado 2021

A mosaic monoploid reference sequence for the highly complex genome of sugarcane

por Garsmeur, Olivier, Droc, Gaetan, Antonise, Rudie, Grimwood, Jane, Potier, Bernard, Aitken, Karen, Jenkins, Jerry, Martin, Guillaume, Charron, Carine, Hervouet, Catherine, Costet, Laurent, Yahiaoui, Nabila, Healey, Adam, Sims, David, Cherukuri, Yesesri, Sreedasyam, Avinash, Kilian, Andrzej, Chan, Agnes, Van Sluys, Marie-Anne, Swaminathan, Kankshita, Town, Christopher, Bergès, Hélène, Simmons, Blake, Glaszmann, Jean Christophe, van der Vossen, Edwin, Henry, Robert, Schmutz, Jeremy, D’Hont, Angélique
Publicado 2018

Lignin deconstruction by anaerobic fungi

por Lankiewicz, Thomas S., Choudhary, Hemant, Gao, Yu, Amer, Bashar, Lillington, Stephen P., Leggieri, Patrick A., Brown, Jennifer L., Swift, Candice L., Lipzen, Anna, Na, Hyunsoo, Amirebrahimi, Mojgan, Theodorou, Michael K., Baidoo, Edward E. K., Barry, Kerrie, Grigoriev, Igor V., Timokhin, Vitaliy I., Gladden, John, Singh, Seema, Mortimer, Jenny C., Ralph, John, Simmons, Blake A., Singer, Steven W., O’Malley, Michelle A.
Publicado 2023

Genomic diagnosis for children with intellectual disability and/or developmental delay

por Bowling, Kevin M., Thompson, Michelle L., Amaral, Michelle D., Finnila, Candice R., Hiatt, Susan M., Engel, Krysta L., Cochran, J. Nicholas, Brothers, Kyle B., East, Kelly M., Gray, David E., Kelley, Whitley V., Lamb, Neil E., Lose, Edward J., Rich, Carla A., Simmons, Shirley, Whittle, Jana S., Weaver, Benjamin T., Nesmith, Amy S., Myers, Richard M., Barsh, Gregory S., Bebin, E. Martina, Cooper, Gregory M.
Publicado 2017

Underdiagnosis of Hereditary Breast Cancer: Are Genetic Testing Guidelines a Tool or an Obstacle?

por Beitsch, Peter D., Whitworth, Pat W., Hughes, Kevin, Patel, Rakesh, Rosen, Barry, Compagnoni, Gia, Baron, Paul, Simmons, Rache, Smith, Linda Ann, Grady, Ian, Kinney, Michael, Coomer, Cynara, Barbosa, Karen, Holmes, Dennis R., Brown, Eric, Gold, Linsey, Clark, Patricia, Riley, Lee, Lyons, Samuel, Ruiz, Antonio, Kahn, Sadia, MacDonald, Heather, Curcio, Lisa, Hardwick, Mary Kay, Yang, Shan, Esplin, Ed D., Nussbaum, Robert L.
Publicado 2019

Genetic resistance to transmissible spongiform encephalopathies (TSE) in goats

por Ricci, Antonia, Allende, Ana, Bolton, Declan, Chemaly, Marianne, Davies, Robert, Fernández Escámez, Pablo Salvador, Gironés, Rosina, Herman, Lieve, Koutsoumanis, Kostas, Lindqvist, Roland, Nørrung, Birgit, Robertson, Lucy, Ru, Giuseppe, Sanaa, Moez, Skandamis, Panagiotis, Speybroeck, Niko, Simmons, Marion, Kuile, Benno Ter, Threlfall, John, Wahlström, Helene, Acutis, Pier‐Luigi, Andreoletti, Olivier, Goldmann, Wilfred, Langeveld, Jan, Windig, Jack J, Ortiz Pelaez, Angel, Snary, Emma
Publicado 2017

Patients with sporadic FTLD exhibit similar increases in lysosomal proteins and storage material as patients with FTD due to GRN mutations

por Davis, Skylar E., Cook, Anna K., Hall, Justin A., Voskobiynyk, Yuliya, Carullo, Nancy V., Boyle, Nicholas R., Hakim, Ahmad R., Anderson, Kristian M., Hobdy, Kierra P., Pugh, Derian A., Murchison, Charles F., McMeekin, Laura J., Simmons, Micah, Margolies, Katherine A., Cowell, Rita M., Nana, Alissa L., Spina, Salvatore, Grinberg, Lea T., Miller, Bruce L., Seeley, William W., Arrant, Andrew E.
Publicado 2023

Transmission of antimicrobial resistance (AMR) during animal transport

por Koutsoumanis, Konstantinos, Allende, Ana, Álvarez‐Ordóñez, Avelino, Bolton, Declan, Bover‐Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Herman, Lieve, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Ru, Giuseppe, Simmons, Marion, Skandamis, Panagiotis, Suffredini, Elisabetta, Argüello‐Rodríguez, Héctor, Dohmen, Wietske, Magistrali, Chiara Francesca, Padalino, Barbara, Tenhagen, Bernd‐Alois, Threlfall, John, García‐Fierro, Raquel, Guerra, Beatriz, Liébana, Ernesto, Stella, Pietro, Peixe, Luisa
Publicado 2022

The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

por Chen, Wenbo, Hasegawa, Daniel K., Kaur, Navneet, Kliot, Adi, Pinheiro, Patricia Valle, Luan, Junbo, Stensmyr, Marcus C., Zheng, Yi, Liu, Wenli, Sun, Honghe, Xu, Yimin, Luo, Yuan, Kruse, Angela, Yang, Xiaowei, Kontsedalov, Svetlana, Lebedev, Galina, Fisher, Tonja W., Nelson, David R., Hunter, Wayne B., Brown, Judith K., Jander, Georg, Cilia, Michelle, Douglas, Angela E., Ghanim, Murad, Simmons, Alvin M., Wintermantel, William M., Ling, Kai-Shu, Fei, Zhangjun
Publicado 2016

Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines

por Chhibber, A, French, C E, Yee, S W, Gamazon, E R, Theusch, E, Qin, X, Webb, A, Papp, A C, Wang, A, Simmons, C Q, Konkashbaev, A, Chaudhry, A S, Mitchel, K, Stryke, D, Ferrin, T E, Weiss, S T, Kroetz, D L, Sadee, W, Nickerson, D A, Krauss, R M, George, A L, Schuetz, E G, Medina, M W, Cox, N J, Scherer, S E, Giacomini, K M, Brenner, S E
Publicado 2017

Interferon-Gamma–Producing CD8(+) Tissue Resident Memory T Cells Are a Targetable Hallmark of Immune Checkpoint Inhibitor–Colitis

por Sasson, Sarah C., Slevin, Stephanie M., Cheung, Vincent T.F., Nassiri, Isar, Olsson-Brown, Anna, Fryer, Eve, Ferreira, Ricardo C., Trzupek, Dominik, Gupta, Tarun, Al-Hillawi, Lulia, Issaias, Mari-lenna, Easton, Alistair, Campo, Leticia, FitzPatrick, Michael E.B., Adams, Joss, Chitnis, Meenali, Protheroe, Andrew, Tuthill, Mark, Coupe, Nicholas, Simmons, Alison, Payne, Miranda, Middleton, Mark R., Travis, Simon P.L., Fairfax, Benjamin P., Klenerman, Paul, Brain, Oliver
Publicado 2021