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1341por Sun, Chengming, Wang, Benqi, Wang, Xiaohua, Hu, Kaining, Li, Kaidi, Li, Zhanyu, Li, San, Yan, Lei, Guan, Chunyun, Zhang, Jiefu, Zhang, Zhenqian, Chen, Song, Wen, Jing, Tu, Jinxing, Shen, Jinxiong, Fu, Tingdong, Yi, Bin“…Statistical analyses revealed a significantly positive correlation between the branch angle and multiple plant-type and yield-related traits. The 60 K Brassica Infinium(®) single nucleotide polymorphism (SNP) array was utilized to genotype an association panel with 520 diverse accessions. …”
Publicado 2016
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1342por Trolle, Christian, Nielsen, Morten Muhlig, Skakkebæk, Anne, Lamy, Philippe, Vang, Søren, Hedegaard, Jakob, Nordentoft, Iver, Ørntoft, Torben Falck, Pedersen, Jakob Skou, Gravholt, Claus Højbjerg“…The present study investigates the leukocyte DNAmethylation profile by using the 450K-Illumina Infinium assay and the leukocyte RNA-expression profile in 45,X monosomy compared with karyotypically normal female and male controls. …”
Publicado 2016
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1343por Wockner, L F, Morris, C P, Noble, E P, Lawford, B R, Whitehall, V L J, Young, R M, Voisey, J“…We believe this was the first genome-wide methylation study performed on human brain tissue using the Illumina Infinium HumanMethylation450 Bead Chip. To understand the biological significance of these results, we sought to identify a smaller number of differentially methylated regions (DMRs) of more functional relevance compared with individual differentially methylated sites. …”
Publicado 2015
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1344“…METHODS: Five SCC cell lines, two cultured samples of normal human epidermal keratinocytes (NHEKs), 18 clinical SCC samples, and 21 clinical KA samples were analyzed with Infinium HumanMethylation450 BeadChips, quantitative real-time methylation-specific PCR (RT-MSP) and/or bisulfite sequencing. …”
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1345por Scott, Cameron M., Joo, JiHoon Eric, O’Callaghan, Neil, Buchanan, Daniel D., Clendenning, Mark, Giles, Graham G., Hopper, John L., Wong, Ee Ming, Southey, Melissa C.“…We examined the role of methylation in known breast cancer susceptibility genes in breast cancer predisposition and tumor development. We applied the Infinium HumanMethylation450 Beadchip (HM450K) array to blood and tumor-derived DNA from 43 women diagnosed with breast cancer before the age of 40 years and measured the methylation profiles across promoter regions of BRCA1, BRCA2, ATM, PALB2, CDH1, TP53, FANCM, CHEK2, MLH1, MSH2, MSH6 and PMS2. …”
Publicado 2016
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1346por Kai, Masahiro, Niinuma, Takeshi, Kitajima, Hiroshi, Yamamoto, Eiichiro, Harada, Taku, Aoki, Hironori, Maruyama, Reo, Toyota, Mutsumi, Sasaki, Yasushi, Sugai, Tamotsu, Tokino, Takashi, Nakase, Hiroshi, Suzuki, Hiromu“…Stable TET1 knockdown clones were established using Colo320DM cells, which express high levels of TET1, and HCT116 cells, which express TET1 at a level similar to that in normal colonic tissue. Infinium HumanMethylation450 BeadChip assays revealed increased levels of 5-methylcytosine at more than 10,000 CpG sites in TET1-depleted Colo320DM cells. …”
Publicado 2016
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1347por Lin, Honghuang, Yin, Xiaoyan, Xie, Zhijun, Lunetta, Kathryn L., Lubitz, Steven A., Larson, Martin G., Ko, Darae, Magnani, Jared W., Mendelson, Michael M., Liu, Chunyu, McManus, David D., Levy, Daniel, Ellinor, Patrick T., Benjamin, Emelia J.“…Genome-wide methylation was profiled using the Illumina Infinium HumanMethylation450 BeadChip on blood-derived DNA collected during the eighth examination cycle (2005–2008). …”
Publicado 2017
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1348“…By combining these data with genotyping data from the Brassica 60 K Illumina® Infinium SNP array, we performed a genome-wide marker distribution analysis across the 4 ecogeographical morphotypes. …”
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1349por Hewitt, Alex W, Januar, Vania, Sexton-Oates, Alexandra, Joo, Jihoon E, Franchina, Maria, Wang, Jie Jin, Liang, Helena, Craig, Jamie E, Saffery, Richard“…In this study, matched human blood and eye tissue (n = 8) were obtained post-mortem and DNA methylation profiling performed on blood, neurosensory retina, retinal pigment epithelium (RPE)/choroid and optic nerve tissue using the Illumina Infinium HumanMethylation450 platform. Unsupervised clustering and principal components analysis revealed tissue of origin as the main driver of methylation variation. …”
Publicado 2017
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1350por Singh, Anshuman, Carandang, Jerome, Gonzaga, Zennia Jean C., Collard, Bertrand C. Y., Ismail, Abdelbagi M., Septiningsih, Endang M.“…Genotyping was performed using the Illumina Infinium genotyping platform with a 6 K SNP chip, resulting in 469 polymorphic SNPs. …”
Publicado 2017
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1351por Wan, Heping, Chen, Lunlin, Guo, Jianbin, Li, Qun, Wen, Jing, Yi, Bin, Ma, Chaozhi, Tu, Jinxing, Fu, Tingdong, Shen, Jinxiong“…A natural population comprising 368 B. napus cultivars and inbred lines was genotyped with a Brassica 60K Illumina Infinium SNP array. The results revealed that 75 single-nucleotide polymorphisms (SNPs) distributed across 14 chromosomes were associated with four salt tolerance-related traits. …”
Publicado 2017
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1352“…We used the Illumina Infinium HumanMethylation450 Beadchip Array to quantify DNAm on a genome-wide scale in the postmortem STG from 22 SZ subjects and matched non-psychiatric control (NPC) subjects; DSD measures were available for 17 of the 22 subject pairs. …”
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1353“…Against this gloomy backdrop, the emergence of distant communications technology offers solace and optimism as an ingenious approach to bridge the existing gap between clients and mental health professionals. …”
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1354por Li, Hongge, Zhang, Liping, Hu, Jihong, Zhang, Fugui, Chen, Biyun, Xu, Kun, Gao, Guizhen, Li, Hao, Zhang, Tianyao, Li, Zaiyun, Wu, Xiaoming“…An association panel with 472 diverse accessions was estimated for branch angle trait in six environments and genotyped with a 60K Brassica Infinium® SNP array. As a result of association mapping, 46 and 38 significantly-associated loci were detected using a mixed linear model (MLM) and a multi-locus random-SNP-effect mixed linear model (MRMLM), which explained up to 62.2 and 66.2% of the cumulative phenotypic variation, respectively. …”
Publicado 2017
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1355por Sun, Zhengwen, Wang, Xingfen, Liu, Zhengwen, Gu, Qishen, Zhang, Yan, Li, Zhikun, Ke, Huifeng, Yang, Jun, Wu, Jinhua, Wu, Liqiang, Zhang, Guiyin, Zhang, Caiying, Ma, Zhiying“…In this study, we conducted phenotyping and genetic variation analyses of 719 diverse accessions of upland cotton based on multiple environment tests and a recently developed Cotton 63K Illumina Infinium SNP array and performed a genome‐wide association study (GWAS) of fibre quality traits. …”
Publicado 2017
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1356por Zheng, Ming, Peng, Cheng, Liu, Hongfang, Tang, Min, Yang, Hongli, Li, Xiaokang, Liu, Jinglin, Sun, Xingchao, Wang, Xinfa, Xu, Junfeng, Hua, Wei, Wang, Hanzhong“…A genome-wide association study (GWAS) was performed via Q + K model and the panel was genotyped using the 60 k Brassica Infinium SNP array. We identified seven loci for PH, four for BIH, and five for BN. …”
Publicado 2017
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1357por Stefansson, Olafur A., Moran, Sebastian, Gomez, Antonio, Sayols, Sergi, Arribas-Jorba, Carlos, Sandoval, Juan, Hilmarsdottir, Holmfridur, Olafsdottir, Elinborg, Tryggvadottir, Laufey, Jonasson, Jon G., Eyfjord, Jorunn, Esteller, Manel“…DNA methylation was analyzed using Infinium 450K arrays in 40 tumors and 17 normal breast samples, together with DNA copy number changes and subtype‐specific markers by tissue microarrays. …”
Publicado 2014
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1358por Johansson, Ida, Lauss, Martin, Holm, Karolina, Staaf, Johan, Nilsson, Cecilia, Fjällskog, Marie-Louise, Ringnér, Markus, Hedenfalk, Ingrid“…The aim of this study was to assess genome‐wide DNA methylation profiles in MBC and compare them with the previously identified transcriptional subgroups of MBC, luminal M1 and M2, as well as the intrinsic subtypes of FBC. Illumina's 450K Infinium arrays were applied to 47 MBC and 188 FBC tumors. …”
Publicado 2015
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1359por Bjaanæs, Maria Moksnes, Fleischer, Thomas, Halvorsen, Ann Rita, Daunay, Antoine, Busato, Florence, Solberg, Steinar, Jørgensen, Lars, Kure, Elin, Edvardsen, Hege, Børresen-Dale, Anne-Lise, Brustugun, Odd Terje, Tost, Jörg, Kristensen, Vessela, Helland, Åslaug“…Results: We determined whole‐genome DNA methylation profiles of 164 fresh frozen lung adenocarcinoma samples and 19 samples of matched normal lung tissue using the Illumina Infinium 450K array. A large number of differentially methylated CpGs in lung adenocarcinoma tissue were identified, and specific methylation profiles were observed in tumors with mutations in the EGFR‐, KRAS‐ or TP53 genes and according to the patients' smoking status. …”
Publicado 2015
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1360por Kantojärvi, Katri, Liuhanen, Johanna, Saarenpää-Heikkilä, Outi, Satomaa, Anna-Liisa, Kylliäinen, Anneli, Pölkki, Pirjo, Jaatela, Julia, Toivola, Auli, Milani, Lili, Himanen, Sari-Leena, Porkka-Heiskanen, Tarja, Paavonen, Juulia, Paunio, Tiina“…The study sample consists of 1086 infants (520 girls and 566 boys) from the Finnish CHILD-SLEEP birth cohort (genotyped by Illumina Infinium PsychArray BeadChip). Sleep length, latency, and nightly awakenings were reported by the parents of the infants with a home-delivered questionnaire at 8 months of age. …”
Publicado 2017
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