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1501por Lange, Christopher P. E., Campan, Mihaela, Hinoue, Toshinori, Schmitz, Roderick F., van der Meulen-de Jong, Andrea E., Slingerland, Hilde, Kok, Peter J. M. J., van Dijk, Cornelis M., Weisenberger, Daniel J., Shen, Hui, Tollenaar, Robertus A. E. M., Laird, Peter W.“…DNA methylation data were generated by the Illumina Infinium HumanMethylation27 and the HumanMethylation450 platforms, which determine the methylation status of 27,578 and 482,421 CpG sites respectively. …”
Publicado 2012
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1502por Yang, Xiaoyun, Forier, Katrien, Steukers, Lennert, Van Vlierberghe, Sandra, Dubruel, Peter, Braeckmans, Kevin, Glorieux, Sarah, Nauwynck, Hans J.“…In this context, PRV developed ingenious processes to overcome different barriers such as epithelial cells and the basement membrane. …”
Publicado 2012
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1503por Gandolfi, Barbara, Gruffydd-Jones, Timothy J., Malik, Richard, Cortes, Alejandro, Jones, Boyd R., Helps, Chris R., Prinzenberg, Eva M., Erhardt, George, Lyons, Leslie A.“…A genome wide case-control study using the illumina Infinium Feline 63K iSelect DNA array was performed using 35 cases and 25 controls from the Burmese breed that identified a locus on chromosome E1 associated with hypokalemia. …”
Publicado 2012
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1504por Ellis, Justine A, Munro, Jane E, Chavez, Raul A, Gordon, Lavinia, Joo, Jihoon E, Akikusa, Jonathan D, Allen, Roger C, Ponsonby, Anne-Louise, Craig, Jeffrey M, Saffery, Richard“…Genome-scale methylation analysis was carried out using the Illumina Infinium HumanMethylation27 BeadChip. Methylation data at >25,000 CpGs was compared in a case-control study design. …”
Publicado 2012
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1505“…Based on these characteristics, we exploited Infinium HumanMethylation450 BeadChip kits in a 2-tissue parallel screen on peripheral blood leukocyte and colonic mucosal DNA from 10 children without identifiable large intestinal disease. …”
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1506por De Meyer, Tim, Mampaey, Evi, Vlemmix, Michaël, Denil, Simon, Trooskens, Geert, Renard, Jean-Pierre, De Keulenaer, Sarah, Dehan, Pierre, Menschaert, Gerben, Van Criekinge, Wim“…Reduced representation bisulfite sequencing data (all three cell lines) and publicly available Illumina Infinium BeadChip data (DU145 and PC3) were used for benchmarking. …”
Publicado 2013
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1507por Kim, Jung H, Rozek, Laura S, Soliman, Amr S, Sartor, Maureen A, Hablas, Ahmed, Seifeldin, Ibrahim A, Colacino, Justin A, Weinhouse, Caren, Nahar, Muna S, Dolinoy, Dana C“…Genome-wide CpG methylation was concurrently measured in bisulfite-converted saliva DNA using the Infinium HumanMethylation27 BeadChip (N = 46). CpG sites from four candidate genes were validated via quantitative bisulfite pyrosequencing. …”
Publicado 2013
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1508
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1509por Kippler, Maria, Engström, Karin, Mlakar, Simona Jurkovic, Bottai, Matteo, Ahmed, Sultan, Hossain, Mohammad Bakhtiar, Raqib, Rubhana, Vahter, Marie, Broberg, Karin“…Global DNA methylation was analyzed by Infinium HumanMethylation450K BeadChip in cord blood and children’s blood. …”
Publicado 2013
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1510“…Based on several filtering criteria, a final set of 16,467 putative sequence variants with characteristics favorable for Illumina Infinium Genotyping Technology (IGT) were mined from the sequence data generated across six diverse sunflower lines. …”
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1511“…We obtained genotypes generated by Illumina Infinium HumanExome v1.1 Beadchip for validation analysis and then used Sanger sequencing as a “gold-standard” method to resolve discrepancies for selected regions of high discordance. …”
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1512por Takahashi, Takamasa, Matsuda, Yasunori, Yamashita, Satoshi, Hattori, Naoko, Kushima, Ryoji, Lee, Yi-Chia, Igaki, Hiroyasu, Tachimori, Yuji, Nagino, Masato, Ushijima, Toshikazu“…Here, we aimed to demonstrate that DNA methylation can be used to estimate the fraction of cancer cells in a tumor DNA sample, using esophageal squamous cell carcinoma (ESCC) as an example. First, by an Infinium HumanMethylation450 BeadChip array, we isolated three genomic regions (TFAP2B, ARHGEF4, and RAPGEFL1) i) highly methylated in four ESCC cell lines, ii) hardly methylated in a pooled sample of non-cancerous mucosae, a pooled sample of normal esophageal mucosae, and peripheral leukocytes, and iii) frequently methylated in 28 ESCCs (TFAP2B, 24/28; ARHGEF4, 20/28; and RAPGEFL1, 19/28). …”
Publicado 2013
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1513por Kikuchi, Yasuko, Tsuji, Eiichi, Yagi, Koichi, Matsusaka, Keisuke, Tsuji, Shingo, Kurebayashi, Junichi, Ogawa, Toshihisa, Aburatani, Hiroyuki, Kaneda, Atsushi“…We here performed genome-wide analysis of DNA methylation of promoter regions by Infinium HumanMethylation27 BeadChip, using 14 clinical papillary thyroid cancer samples and 10 normal thyroid samples. …”
Publicado 2013
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1514por Jones, Meaghan J, Farré, Pau, McEwen, Lisa M, MacIsaac, Julia L, Watt, Kim, Neumann, Sarah M, Emberly, Eldon, Cynader, Max S, Virji-Babul, Naznin, Kobor, Michael S“…In addition we examined DNA methylation at the APP gene itself, to see whether there were changes in DNA methylation in this population. Using the Illumina Infinium 450 K Human Methylation Array, we examined more than 485,000 CpG sites distributed across the genome in buccal epithelial cells. …”
Publicado 2013
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1515por Patil, Veeresh K, Holloway, John W, Zhang, Hongmei, Soto-Ramirez, Nelis, Ewart, Susan, Arshad, S Hasan, Karmaus, Wilfried“…DNA-M was assessed using the Illumina Infinium HumanMethylation450 BeadChip. FINDINGS: Six CpG sites were analyzed in stage 1. …”
Publicado 2013
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1516por van Gent, Michiel, Braem, Steven G. E., de Jong, Annemieke, Delagic, Nezira, Peeters, Janneke G. C., Boer, Ingrid G. J., Moynagh, Paul N., Kremmer, Elisabeth, Wiertz, Emmanuel J., Ovaa, Huib, Griffin, Bryan D., Ressing, Maaike E.“…To allow infection, replication, and persistence, (herpes)viruses employ ingenious strategies to evade host immunity. The human gamma-herpesvirus Epstein-Barr virus (EBV) is a large, enveloped DNA virus persistently carried by more than 90% of adults worldwide. …”
Publicado 2014
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1517por Gonzalo, Victoria, Lozano, Juan Jose, Alonso-Espinaco, Virginia, Moreira, Leticia, Muñoz, Jenifer, Pellisé, Maria, Castellví-Bel, Sergi, Bessa, Xavier, Andreu, Montserrat, Xicola, Rosa M., Llor, Xavier, Ruiz-Ponte, Clara, Carracedo, Angel, Jover, Rodrigo, Castells, Antoni, Balaguer, Francesc“…DNA methylation profiling was performed using the Illumina Infinium HM27 DNA methylation assay. The most significant results were validated by Methylight. …”
Publicado 2014
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1518por Hidalgo, Bertha, Irvin, M. Ryan, Sha, Jin, Zhi, Degui, Aslibekyan, Stella, Absher, Devin, Tiwari, Hemant K., Kabagambe, Edmond K., Ordovas, Jose M., Arnett, Donna K.“…Cytosine guanine dinucleotide (CpG) methylation at ∼470,000 CpG sites was assayed in CD4(+) T cells using the Illumina Infinium HumanMethylation 450 Beadchip. We fit a mixed model with the methylation status of each CpG as the dependent variable, adjusting for age, sex, study site, and T-cell purity as fixed-effects and family structure as a random-effect. …”
Publicado 2014
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1519por Strauss, Anja S., Wang, Ding, Stock, Magdalena, Gretscher, René R., Groth, Marco, Boland, Wilhelm, Burse, Antje“…BACKGROUND: Insects evolved ingenious adaptations to use extraordinary food sources. …”
Publicado 2014
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1520por Sánchez, Gerardo, Martínez, José, Romeu, José, García, Jesús, Monforte, Antonio J, Badenes, María L, Granell, Antonio“…RESULTS: Linkage maps were constructed using the IPSC peach 9 K Infinium ® II array, rendering dense genetic maps, except in the case of certain chromosomes, probably due to identity-by-descent of those chromosomes in the parental genotypes. …”
Publicado 2014
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