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2261por AL-Tam, Faroq, Brunel, Anne-Sophie, Bouzinbi, Nicolas, Corne, Philippe, Bañuls, Anne-Laure, Shahbazkia, Hamid Reza“…Unfortunately the only software on the market is a commercial program from Ridom. FINDINGS: This article presents DNAGear, a free and open source software with a user friendly interface written all in Java on top of NetBeans Platform to perform spa typing, detecting new repeats and new spa types and synchronizing automatically the files with the open access database. …”
Publicado 2012
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2262“…RESULTS: In this paper, we describe two new unsupervised gene set testing methods based on random matrix theory, the Marc̆enko-Pastur Distribution Test (MPDT) and the Tracy-Widom Test (TWT), that support both self-contained and competitive null hypotheses. …”
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2263por Würtz, Martin, Aumiller, Dennis, Gundelwein, Lina, Jung, Philipp, Schütz, Christian, Lehmann, Kathrin, Tóth, Katalin, Rohr, Karl“…Interestingly, a distinct opening of the less bendable DNA side was observed upon H2A mutation, indicating an enhancement of the intrinsic asymmetry of the Widom-601 nucleosomes. This study validates AFM as a technique to investigate structural parameters of nucleosomes and highlights how the DNA sequence, together with nucleosome modifications, can influence the DNA accessibility.…”
Publicado 2019
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2264por van Beek, Janko, Räisänen, Kati, Broas, Markku, Kauranen, Jari, Kähkölä, Arja, Laine, Janne, Mustonen, Eeva, Nurkkala, Tuija, Puhto, Teija, Sinkkonen, Jaana, Torvinen, Senja, Vornanen, Tarja, Vuento, Risto, Jalava, Jari, Lyytikäinen, Outi“…WGS was performed on K. pneumoniae cultures using Illumina MiSeq platform and data were analysed using Ridom SeqShere software K. pneumoniae core genome multilocus sequence typing (cgMLST) scheme. …”
Publicado 2019
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2265por Abou Shady, Hala M., Bakr, Alaa Eldin A., Hashad, Mahmoud E., Alzohairy, Mohammad A.“…S. aureus isolates were characterized by antibiotic susceptibility, presence of mecA and PVL genes, SCCmec-typing and spa typing, the corresponding Multi locus sequence typing clonal complex was assigned for each spa type based on Ridom StaphType database. MRSA was detected in 32% of the Egyptian outpatients while it was found in 25% of the Saudi Arabian outpatients. …”
Publicado 2014
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2266Publicado 1982Tabla de Contenidos: “…La danseuse d'ivoire / de Cyprian Ekwensi -- Le retour / de Ngugi wa Thiong'o -- Lexicographicide / de Taban Lo Liyong -- Ces vents qui viennent du Sud / d'Ama Ata Aidoo -- Couvertures / d'Alex La Guma -- Résurrection / de Richard Rive -- Le transistor / de James Matthews -- L'ambulance / de Sam Kahiga -- Le gagnant / de Barbara Kimenye -- Tentons le coup! …”
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2269por Durieux, David M., Scrogham, Gabrielle D., Fender, Christian, Lewis, David B., Deban, Stephen M., Gemmell, Brad J.“…Furthermore, we show that, at our field site in Lido Key, Florida, at the northernmost limit of Cassiopea range, population densities decline during the winter, increasing seasonal differences in porewater release.…”
Publicado 2023
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2272por Maturen, Katherine E., Canon, Cheri L., Fletcher, Joel G., Hara, Amy K., Kim, David H., Kruskal, Jonathan B., Miller, Frank H., Remer, Erick M., Silverman, Stuart G.Enlace del recurso
Publicado 2023
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2273por Mauro, E., Lapaillerie, D., Tumiotto, C., Charlier, C., Martins, F., Sousa, S. F., Métifiot, M., Weigel, P., Yamatsugu, K., Kanai, M., Munier-Lehmann, H., Richetta, C., Maisch, M., Dutrieux, J., Batisse, J., Ruff, M., Delelis, O., Lesbats, P., Parissi, V.“…To provide new tools to analyze this association and select drugs, we applied the AlphaLISA technology to the complex formed between the prototype foamy virus (PFV) intasome and nucleosome reconstituted on 601 Widom sequence. This system allowed us to monitor the association between both partners and select small molecules that could modulate the intasome/nucleosome association. …”
Publicado 2023
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2274“…The overall statistical association between each gene set and the spectral structure of the data is then computed by combining the PC-level p-values using the weighted Z-method with weights set to the PC variance scaled by Tracy-Widom test p-values. Using simulated data, we show that the SGSE algorithm can accurately recover spectral features from noisy data. …”
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2275por Seth-Smith, Helena M. B., Bonfiglio, Ferdinando, Cuénod, Aline, Reist, Josiane, Egli, Adrian, Wüthrich, Daniel“…Data analyses were performed with standard tools commonly used in outbreak situations: Ridom SeqSphere+ for cgMLST; CLC genomics workbench for SNP analysis; and open source programs. …”
Publicado 2019
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2276“…We have not only tested previously described sequences such as the Widom 601, but also have tested additional nucleosome-positioning sequences: the Trifonov sequence, putative repelling sequence-322 (PRS-322), and various homopolymeric runs of A and T nucleotides. …”
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