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  1. 3841
    por Gao, Jianjiong, Xu, Dong
    Publicado 2010
    “…With its well-designed Java application programming interface (API), Musite can be easily extended to integrate various sources of biological evidence for phosphorylation-site prediction. …”
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    The Musite open-source framework for phosphorylation-site prediction
  2. 3842
    por Wilhelm, Jörg-Hubertus
    Publicado 2011
    “…MyChemise (My Chemical Structure Editor) is a new 2D structure editor. It is designed as a Java applet that enables the direct creation of structures in the Internet using a web browser. …”
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    MyChemise: A 2D drawing program that uses morphing for visualisation purposes
  3. 3843
    “…The proposed teleradiology architecture is pilot implemented using mainly Java-based technologies and is evaluated by engineers in collaboration with doctors. …”
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    Application of Multiprotocol Medical Imaging Communications and an Extended DICOM WADO Service in a Teleradiology Architecture
  4. 3844
    “…An implementation of ISMA in Java is freely available at http://sourceforge.net/projects/isma/.…”
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    The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees
  5. 3845
    “…This tool has been coded in Java and is presented as an ImageJ plugin in order to take advantage of all the functionalities offered by this imaging analysis platform. …”
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    jClustering, an Open Framework for the Development of 4D Clustering Algorithms
  6. 3846
    “…However, as these methods typically require in-depth expertise in Hadoop and Java, they are still out of reach of many bioinformaticians. …”
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    SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop
  7. 3847
    “…The database interface is developed in PHP, HTML and JAVA. FCDD is freely available. AVAILABILITY: http://www.fruitcropsdd.com/…”
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    FCDD: A Database for Fruit Crops Diseases
  8. 3848
    “…The stand-alone packages of HemI were implemented in Java and can be accessed at http://hemi.biocuckoo.org/down.php.…”
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    HemI: A Toolkit for Illustrating Heatmaps
  9. 3849
    “…The website can generate the vector or raster graphical results automatically. We also provide a java-based bytecode binary to enable the command-line execution.…”
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    VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
  10. 3850
    “…We have developed a new platform-independent web-based molecular viewer using JavaScript and WebGL. The molecular viewer, Molmil, has been integrated into several services offered by Protein Data Bank Japan and can be easily extended with new functionality by third party developers. …”
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    Molmil: a molecular viewer for the PDB and beyond
  11. 3851
    por Wang, Yong, Huang, Jiao-Mei
    Publicado 2017
    “…Long inverted repeat explorer (Lirex) was developed and introduced in this report. Written in Java, Lirex provides a user-friendly interface and allows users to specify LIR searching criteria, such as length of the region, as well as pattern and size of the repeats. …”
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    Lirex: A Package for Identification of Long Inverted Repeats in Genomes
  12. 3852
    “…The toolkit is written in Java, thus offering platform-independence and Internet delivery capabilities. …”
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    The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications
  13. 3853
    “…AVAILABILITY AND IMPLEMENTATION: PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz. …”
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    PanViz: interactive visualization of the structure of functionally annotated pangenomes
  14. 3854
    “…METHODS AND RESULTS: Our protocol includes the Explorer of Taxon Concepts (ETC), an online application that assembles taxon‐by‐character matrices from taxonomic descriptions, and MatrixConverter, a Java application that enables users to evaluate and discretize the characters extracted by ETC. …”
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    Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing
  15. 3855
    “…AVAILABILITY AND IMPLEMENTATION: SAPP is written in JAVA and freely available at https://gitlab.com/sapp and runs on Unix-like operating systems. …”
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    SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
  16. 3856
    “…AVAILABILITY AND IMPLEMENTATION: CAVER Analyst 2.0 is a multi-platform standalone Java-based application. Binaries and documentation are freely available at www.caver.cz. …”
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    CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
  17. 3857
    por Berenschot, Ward
    Publicado 2018
    “…I find a pattern that poorly matches these dominant theories: Clientelism is perceived to be less intense in rural, poverty-prone Java, while scores are high in relatively wealthy yet state-dependent provincial capitals. …”
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    The Political Economy of Clientelism: A Comparative Study of Indonesia’s Patronage Democracy
  18. 3858
    “…AVAILABILITY AND IMPLEMENTATION: 3DPatch is written in JavaScript and is freely available at http://www.skylign.org/3DPatch/. …”
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    3DPatch: fast 3D structure visualization with residue conservation
  19. 3859
    “…METHODS: One student of Applied Sciences (16 weeks full time), access to pre-publication review files and use of ‘Eclipse’ to create an open-access tool (RAPTOR) using the programming language Java. RESULTS: The final software batch processes hundreds of reviews in seconds, extracting all study data and automatically tidying and unifying presentation of data for return into the source review, reuse, or export for novel analyses. …”
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    Introducing RAPTOR: RevMan Parsing Tool for Reviewers
  20. 3860
    por Liu, Jian, Yang, Mo, Zhang, Lei, Zhou, Weijun
    Publicado 2019
    “…Inspired by the success of the new designs in National Center for Biotechnology Information dbSNP (The Single Nucleotide Polymorphism Database) for managing the increasing data volumes using JSON (JavaScript Object Notation), in this paper we present an effective mapping tool that allows data migrations from RDF to JSON for supporting future massive data explosions and releases. …”
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    An effective biomedical data migration tool from resource description framework to JSON
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