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  1. 3921
    “…Availability and implementation: ADAM is implemented using Java and supported on Linux. It is open source under the GNU General Public License v3.0. …”
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    ADAM: automated data management for research datasets
  2. 3922
    “…These tools are available publically but have limitations with reference to the sequence extraction, length of the sequence to be extracted, organism specificity and lack of user friendly interface. We have developed a java based software package having three modules which can be used independently or sequentially. …”
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    Sequence Maneuverer: tool for sequence extraction from genomes
  3. 3923
    “…The application is implemented in Java with bundles available for MS Windows and Macintosh OS X. …”
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    Metingear: a development environment for annotating genome-scale metabolic models
  4. 3924
    por Meijer, Hanneke J.M.
    Publicado 2014
    “…Similarities between the Late Pleistocene avifaunas of Flores and Java suggest a dispersal route across southern Sundaland. …”
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    The avian fossil record in Insular Southeast Asia and its implications for avian biogeography and palaeoecology
  5. 3925
    “…A web service of GPS-SUMO was implemented in PHP + JavaScript and freely available at http://sumosp.biocuckoo.org.…”
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    GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs
  6. 3926
    “…It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?…”
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    Trimmomatic: a flexible trimmer for Illumina sequence data
  7. 3927
    “…Hence, we describe a web tool (developed using Java programming language and MySQL database server) to analyse multiple targets of pre-selected miRNAs. …”
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    TargetCompare: A web interface to compare simultaneous miRNAs targets
  8. 3928
    “…These modules enable users to seamlessly export network and table data sets generated in Cytoscape to popular JavaScript library readable formats. In addition, we implemented template web applications for browser-based interactive network visualization that can be used as basis for complex data visualization applications for bioinformatics research. …”
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    Cytoscape tools for the web age: D3.js and Cytoscape.js exporters
  9. 3929
    “…The Metabolic Models Reconstruction Using Genome-Scale Information (merlin) tool is a user-friendly Java application that aids the reconstruction of genome-scale metabolic models for any organism that has its genome sequenced. …”
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    Reconstructing genome-scale metabolic models with merlin
  10. 3930
    “…By analyzing their digital mammographic images using a public domain Java image processing program for segmentation and quantification of MBD, we found their left and right breasts were symmetric to each other in regard to their breast size (Total Breast Area), the amount of BMD (overall PD) and Moran's I values. …”
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    Mammographic Breast Density in Chinese Women: Spatial Distribution and Autocorrelation Patterns
  11. 3931
    “…Binaries and source code (java and python) are available from http://sourceforge.net/projects/rambok/.…”
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    RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data
  12. 3932
    por Schmid, Benjamin, Huisken, Jan
    Publicado 2015
    “…Availability and implementation: Source code and binaries are available on github (https://github.com/bene51/), native code under the repository ‘gpu_deconvolution’, Java wrappers implementing Fiji plugins under ‘SPIM_Reconstruction_Cuda’. …”
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    Real-time multi-view deconvolution
  13. 3933
    “…The timing of black shale formation in the Cretaceous is strongly correlated with the emplacement of large igneous provinces such as the Ontong Java Plateau, suggesting that black shale deposition was ultimately induced by massive volcanic events. …”
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    The origin of Cretaceous black shales: a change in the surface ocean ecosystem and its triggers
  14. 3934
    por Ellis, David A., Merdian, Hannah L.
    Publicado 2015
    “…Previously, knowledge of HTML, CSS, or Java was essential, but here we develop several interactive visualizations using a simple web application framework that runs under the R statistical platform: Shiny. …”
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    Thinking Outside the Box: Developing Dynamic Data Visualizations for Psychology with Shiny
  15. 3935
    “…CONCLUSIONS: SPAI is written in Java and tested in Linux operating system.…”
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    SPAI: an interactive platform for indel analysis
  16. 3936
    “…Here we show that this model can be efficiently used to generate synthetic datasets with statistical properties virtually identical to those of the actual data by aid of the JAVA application ace.map creator 1.0 that we have developed. …”
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    Generation of Synthetic Transcriptome Data with Defined Statistical Properties for the Development and Testing of New Analysis Methods
  17. 3937
    “…During 2012, we conducted a survey of clinicians in two districts in western Java, Indonesia, to assess knowledge, attitudes, and practices (KAP) of clinical diagnosis, testing, and treatment of patients with seasonal influenza, pandemic influenza, or HPAI H5N1 virus infections. …”
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    Physician's knowledge, attitudes, and practices regarding seasonal influenza, pandemic influenza, and highly pathogenic avian influenza A (H5N1) virus infections of humans in Indonesia
  18. 3938
    “…Koch, 1845) is recorded after 120 years of its last report; newly recorded from Assam, India which extends its distribution from the previously known localities, Java and Sumatra. Platythomisus sudeepi is newly recorded from the Maharashtra State. …”
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    Report of Platythomisus octomaculatus (C. L. Koch, 1845) and Platythomisus sudeepi Biswas, 1977 from India (Araneae, Thomisidae)
  19. 3939
    “…PRJNA322592 and Accession No. MAUZ00000000, MAVA00000000, MAVB00000000, MAVC00000000, MAVD00000000, MAVE00000000, MAVF00000000, MAVG00000000 (https://www.ncbi.nlm.nih.gov/bioproject/?…”
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    Metagenomic data of DNA viruses of poultry affected with respiratory tract infection
  20. 3940
    “…RESULTS: We developed ‘pedigreejs’, an interactive graphical pedigree editor written in JavaScript, which uses standard pedigree nomenclature. …”
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    pedigreejs: a web-based graphical pedigree editor
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