“…In this paper, we develop a CyNetSVM software package, implemented in Java and integrated with Cytoscape as an app, to identify network biomarkers using network-constrained support vector machines (NetSVM). …”
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“…IMPLEMENTATION: ASCIIGenome is written in Java. Consequently, it is a cross-platform tool and requires minimal or no installation. …”
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“…We thus performed a prevalence study across four hospitals in Central Java province, Indonesia. Stool samples were collected from patients with diarrhoea and tested by enzyme immunoassay for glutamate dehydrogenase (GDH) and toxin A/B (C DIFF QUIK CHEK COMPLETE, TechLab). …”
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“…Recent physical oceanography such as the South Java Current and the Seasonally Reversing Current may also play a role in shaping the genetic patterns of E. acoroides.…”
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“…AVAILABILITY AND IMPLEMENTATION: The UC2 search tool is available free of charge as a REST web service (http://webs2.kazusa.or.jp/mfsearcher) and a Java-based GUI tool. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…The atlas is designed to be accessed using SHIVA, a free Java application. The atlas is extensible and can contain other types of information including anatomical, physiological, and functional descriptors. …”
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“…The CICIL methodology has also been implemented in a user‐friendly and efficient Java‐based framework.…”
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“…AVAILABILITY AND IMPLEMENTATION: VIPER is implemented in Java and Javascript and is freely available at https://github.com/MarWoes/viper. …”
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“…ViCTree incorporates ViCTreeView, which is a JavaScript-based visualization tool that enables the tree to be explored interactively in the context of pairwise distance data. …”
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“…AVAILABILITY AND IMPLEMENTATION: CaSiAn is implemented in Java and available on Github (https://github.com/mmahsa/CaSiAn) as well as on the project page (http://r3lab.uni.lu/web/casa). …”
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“…The proposed framework was implemented using Java as the development environment, and MongoDB as the database manager. …”
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“…RESULTS: We developed ProSave, a free and user-friendly Java-based program that retrieves spectral count data from a curated list of proteins in a large proteomics dataset. …”
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“…(rambai) is one of the underutilized fruit natives to Indonesia, Thailand, and Malaya Peninsula and it is mostly cultivated in Java island (Lim, 2012) [1]. The edible part of fruits is white and reddish arillodes in which having sweet to acid-sweet tastes. …”
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“…AVAILABILITY AND IMPLEMENTATION: Software packages (available in Python, R, Matlab and Java) are freely available at https://github.com/cmap. …”
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“…Eupatorin is the major bioactive component of Java tea (Orthosiphon stamineus), exhibiting strong anticancer and anti-inflammatory activities. …”
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“…The Core Scientific Dataset (CSD) model with JavaScript Object Notation (JSON) serialization is presented as a lightweight, portable, and versatile standard for intra- and interdisciplinary scientific data exchange. …”
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“…This data article compiles the detailed and descriptive experimental data of Wikipedia-based semantic similarity approach called as Neighbourhood Aggregated Semantic Contribution (NASC), presented in Husain, et al. [1]. The JWPL (Java Wikipedia Library)-DataMachine and JWPL WikipediaAPI are used to extract the required Wikipedia features from Wikipedia dump. …”
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“…This study investigated an ultraviolet–visible (UV-Vis) spectroscopy-based determination of caffeine and chlorogenic acid contents, as well as the applicability of non-targeted near-infrared (NIR) spectroscopy, to discriminate between green coffee beans of the Coffea arabica (Arabica) and Coffea canephora (Robusta) species from Java Island, Indonesia. The discrimination was conducted by measuring the caffeine and chlorogenic acid content in the beans using UV-Vis spectroscopy. …”
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“…This study aimed to calculate the breadth, depth, and overall outreach score with case studies of several Islamic cooperatives in East Java. Generally, the level of this outreach is not too high, but it continuously showed an increase from 2014 to 2018. …”
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“…We provide implementations of Goslin in four major programming languages, namely, C++, Java, Python 3, and R to kick-start adoption and integration. …”
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