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  1. 4201
    “…The core of SCIFIO is its modular definition of formats, the design of which clearly outlines the components of image I/O to encourage extensibility, facilitated by the dynamic discovery of the SciJava plugin framework. SCIFIO is structured to support coexistence of multiple domain-specific open exchange formats, such as Bio-Formats’ OME-TIFF, within a unified environment. …”
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    SCIFIO: an extensible framework to support scientific image formats
  2. 4202
    “…Net2Align has been implemented in Java 7 and the source code is available as supplementary files.…”
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    Net2Align: An Algorithm For Pairwise Global Alignment of Biological Networks
  3. 4203
    “…AVAILABILITY AND IMPLEMENTATION: PISMA is developed in Java; it is executable in any type of hardware and in diverse operating systems. …”
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    PISMA: A Visual Representation of Motif Distribution in DNA Sequences
  4. 4204
    “…CircularLogo is implemented in JavaScript and Python based on the Django web framework. …”
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    CircularLogo: A lightweight web application to visualize intra-motif dependencies
  5. 4205
    “…Haplogroup I is widespread in the Southeast Asian mainland whereas haplogroup II is generally restricted to the type population Java Island. Both haplogroups were detected co-occurring on Borneo Island. …”
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    Contrasting evolutionary patterns between two haplogroups of Haematobia exigua (Diptera: Muscidae) from the mainland and islands of Southeast Asia
  6. 4206
    “…We developed VCF.Filter to facilitate the search for disease-linked variants, providing a standalone Java program with a user-friendly interface for interactive variant filtering and annotation. …”
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    VCF.Filter: interactive prioritization of disease-linked genetic variants from sequencing data
  7. 4207
    “…C-State has an interactive, JavaScript-based graphical user interface and runs locally in modern web browsers that are pre-installed on all computers, thus eliminating the need for cumbersome data transfer, pre-processing and prior programming knowledge. …”
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    C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search
  8. 4208
    “…These chickens were originated from West Java and collected based on pathologist diagnosis as suspect of Newcastle disease (ND). …”
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    Pathology and immunohistochemistry study of Newcastle disease field case in chicken in Indonesia
  9. 4209
    “…[Subjects and Methods] A tablet app was developed in the Java language. A questionnaire was provided to 30 community-dwelling elderly people. …”
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    Difference between tablet methods and paper questionnaire methods of conducting a survey with community-dwelling elderly
  10. 4210
    “…Database records are available in MongoDB, CSV and JSON formats which can easily be read using Python, R, Java and MatLab. This makes the database easy to query for tackling big-data materials science initiatives and provides a basis for magnetic materials discovery.…”
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    Auto-generated materials database of Curie and Néel temperatures via semi-supervised relationship extraction
  11. 4211
    “…Furthermore, we have refactored our JavaScript visualization library to provide standalone components for different result representations. …”
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    HMMER web server: 2018 update
  12. 4212
    por Huh, Jun-Ho
    Publicado 2018
    “…The algorithm was implemented with C++ and Unity/C#, whereas the application for the part concerning the integrated sensing was developed with Java Android.…”
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    PLC-Integrated Sensing Technology in Mountain Regions for Drone Landing Sites: Focusing on Software Technology
  13. 4213
    “…Moreover, it provides advanced application programming interfaces in Java, Scala, Python, and R. It also supports some advanced components, including Spark SQL for structured data processing, MLlib for machine learning, GraphX for computing graphs, and Spark Streaming for stream computing. …”
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    Bioinformatics applications on Apache Spark
  14. 4214
    “…METHOD: This research conducted a survey study on 1,269 respondents in East Java (in which the prevalence of severe mental disorder is 2.2‰). …”
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    Stigma toward people with mental health problems in Indonesia
  15. 4215
    “…We also offer Aequatus.js, a reusable JavaScript module that fulfills the visualization aspects of Aequatus, available within the Galaxy web platform as a visualization plug-in, which can be used to visualize gene trees generated by the GeneSeqToFamily workflow.…”
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    Aequatus: an open-source homology browser
  16. 4216
    “…We performed phylogenetic analysis on 39 full-genome H5N1 virus samples collected during outbreaks among poultry in 2015–2016 in West Java and compared them with recently published sequences from Indonesia. …”
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    Reassortments among Avian Influenza A(H5N1) Viruses Circulating in Indonesia, 2015–2016
  17. 4217
    por Okubo, Naoya, Kurata, Yohei
    Publicado 2019
    “…Samples of green coffee beans produced in seven locations—Cuba, Ethiopia, Indonesia (Bari, Java, and Sumatra), Tanzania, and Yemen—were analyzed. …”
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    Nondestructive Classification Analysis of Green Coffee Beans by Using Near-Infrared Spectroscopy
  18. 4218
    “…To evaluate this paradigm, we implemented a JavaScript-based web toolkit, “Bioty,” that supports real-time interaction with swarms of phototactic Euglena cells hosted on a cloud laboratory. …”
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    Interactive programming paradigm for real-time experimentation with remote living matter
  19. 4219
    “…The global outputs of annual publication in long non-coding RNAs (lncRNAs) and chemotherapeutic resistance research exponentially increased from 2 in 2008 to 176 in 2017. Using Java application CiteSpace V and VOSviewer, this study assessed the publication model of lncRNAs and chemoresistance by bibliometric analysis. …”
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    A bibliometric analysis of long non-coding RNA and chemotherapeutic resistance research
  20. 4220
    “…The data in this article describes the land use characteristics at peri-urban and rural areas, on Jember District, in the Province of East Java, Indonesia. The types of land use covered in the data are agricultural and residential land. …”
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    Data on agricultural and nonagricultural land use in peri-urban and rural area
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