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  1. 4281
    “…All of these functionality is behind a web server, thus for using our application only a Java-capable web browser is needed, no further program installation is required. …”
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    CMWeb: an interactive on-line tool for analysing residue–residue contacts and contact prediction methods
  2. 4282
    “…RESULTS: TreeSnatcher Plus is a GUI-driven JAVA application that semi-automatically generates a Newick format for multifurcating, arbitrarily shaped, phylogenetic trees contained in pixel images. …”
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    TreeSnatcher plus: capturing phylogenetic trees from images
  3. 4283
    “…Availability and implementation: ExoCNVTest has been implemented in Java and R and is freely available from www1.imperial.ac.uk/medicine/people/l.coin/. …”
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    An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis
  4. 4284
    “…The software written in the Java programming language proposes a user-friendly interface and a complete online manual. …”
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    A user-friendly software to easily count Anopheles egg batches
  5. 4285
    “…The data underlying the original web application (http://flyatlas.org) have been restructured into a relational database and a Java servlet written to provide a new web interface, FlyAtlas 2 (http://flyatlas.gla.ac.uk/), which allows several additional queries. …”
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    FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster
  6. 4286
    “…Transimulation may be accessed at http://nexus.ibb.waw.pl/Transimulation (requires Java version 1.7 or higher). Its manual and source code, distributed under the GPL-2.0 license, is freely available at the website.…”
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    Transimulation - Protein Biosynthesis Web Service
  7. 4287
    “…The plant harboring AYVV was also shown to contain the betasatellite Tomato leaf curl Java betasatellite (ToLCJaB), a satellite not previously shown to be present in Japan. …”
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    Association of an Alphasatellite with Tomato Yellow Leaf Curl Virus and Ageratum Yellow Vein Virus in Japan is Suggestive of a Recent Introduction
  8. 4288
    “…PROPOSAL is available as a Java 2D standalone application or a command line program at http://ferrolab.dmi.unict.it/proposal/proposal.html.…”
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    Proteins comparison through probabilistic optimal structure local alignment
  9. 4289
    “…Availability and implementation: ABRA is implemented in a combination of Java and C/C++ and is freely available for download at https://github.com/mozack/abra. …”
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    ABRA: improved coding indel detection via assembly-based realignment
  10. 4290
    por Danielson, Eric, Lee, Sang H.
    Publicado 2014
    “…SynPAnal is stand-alone software written using the JAVA programming language, and thus is portable and platform-free.…”
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    SynPAnal: Software for Rapid Quantification of the Density and Intensity of Protein Puncta from Fluorescence Microscopy Images of Neurons
  11. 4291
    “…We implemented tEFMA as a Java package which is available for download at https://github.com/mpgerstl/tEFMA.…”
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    Metabolomics integrated elementary flux mode analysis in large metabolic networks
  12. 4292
    “…In order to comply with the privacy, ethics and intellectual property policies of the University Hospital and the University of Verona, data is available upon request to supporto.utenti@ateneo.univr.it after signing a mandatory Materials Transfer Agreement. VDJSeq-Solver JAVA/Perl/Bash software implementation is free and available at http://eda.polito.it/VDJSeq-Solver/.…”
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    VDJSeq-Solver: In Silico V(D)J Recombination Detection Tool
  13. 4293
    “…Protein–protein interaction listings, and their associated evidence strength scores, are obtained from the Mentha interactome server, or power-users may upload a pre-made network produced using some other interactomics tool. The Cytoscape.js JavaScript library is used in producing the graphical display. …”
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    CellWhere: graphical display of interaction networks organized on subcellular localizations
  14. 4294
    “…We describe MassCascade and its workflow plug-in for processing LC-MS data. The Java library integrates frequently used algorithms in a modular fashion, thus enabling it to serve as back-end for graphical front-ends. …”
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    MassCascade: Visual Programming for LC-MS Data Processing in Metabolomics
  15. 4295
    “…The implementation language, Java, makes jEcho platform-independent and visually interactive. …”
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    jEcho: an Evolved weight vector to CHaracterize the protein’s posttranslational modification mOtifs
  16. 4296
    por Heintzmann, R., Kreth, G., Cremer, C.
    Publicado 2000
    “…At this web address an interactive 3D viewer is additionally provided for browsing the 3D data. This java applet displays three orthogonal slices of the data set which are dynamically updated by user mouse clicks or keystrokes.…”
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    Reconstruction of Axial Tomographic High Resolution Data from Confocal Fluorescence Microscopy: A Method for Improving 3D FISH Images
  17. 4297
    por Della Mea, V., Beltrami, C. A.
    Publicado 2000
    “…They may be listed as follows: (a) teleconsultation via multimedia e‐mail; (b) teleconsultation via web‐based tools; (c) distant education by means of World Wide Web; (d) virtual microscope management through Web and Java interfaces; (e) real‐time consultations through Internet‐based videoconferencing. …”
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    Current Experiences with Internet Telepathology and Possible Evolution in the Next Generation of Internet Services
  18. 4298
    “…Although, to date we have applied it to TCR/IG data from human and mouse, it can be applied to data from any species for which an appropriate database of reference genes is available. Implemented in Java, it includes both a command line version and a graphical user interface and is freely available at https://sourceforge.net/projects/lymanalyzer/.…”
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    LymAnalyzer: a tool for comprehensive analysis of next generation sequencing data of T cell receptors and immunoglobulins
  19. 4299
    “…On this basis, by further analysing the observed data, we define a dipole index of the SSSA between the central equatorial Indian Ocean (CEIO: 70°E-90°E, 5°S-5°N) and the region off the Sumatra-Java coast (SJC: 100°E-110°E, 13°S-3°S). Compared with previous SSSA dipole indices, this index has advantages in detecting the dipole signals and in characterizing their relationship to the sea surface temperature anomaly (SSTA) dipole variability. …”
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    A new dipole index of the salinity anomalies of the tropical Indian Ocean
  20. 4300
    “…The objective of this paper is implementation of multiagent system (MAS) for the advanced distributed energy management and demand side management of a solar microgrid. Initially, Java agent development environment (JADE) frame work is used to implement MAS based dynamic energy management of solar microgrid. …”
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    Multiagent Systems Based Modeling and Implementation of Dynamic Energy Management of Smart Microgrid Using MACSimJX
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