“…While populating all other evidence types with new data we introduce a new evidence type based on quantitative mass spectrometry data. Finally, the new JavaScript based network viewer provides the user an intuitive and responsive platform to further evaluate the results.…”
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“…Here, we present SPECTRE, a readily available, open-source library of data structures written in Java, that comes complete with new implementations of several pre-published algorithms and a basic interactive graphical interface for visualizing planar split networks. …”
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“…Glimma is widely applicable, supporting data analyses from a number of well-established Bioconductor workflows (limma, edgeR and DESeq2) and uses D3/JavaScript to produce HTML pages with interactive displays that enable more effective data exploration by end-users. …”
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“…AVAILABILITY AND IMPLEMENTATION: Source code and documentation for a Java implementation of Kestrel can be found at https://github.com/paudano/kestrel. …”
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“…The web server “m6ASNP” is implemented in JAVA and PHP and is freely available at [60].…”
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“…Methods: The mussels were obtained from Mayangan, Kenjeran and Gresik ports, East Java, Indonesia. MT levels were determined using ELISA. …”
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“…Here, we describe the epidemiology of dengue in the city of Yogyakarta, Central Java, as a prelude to implementation of a cluster-randomized trial of Wolbachia for the biocontrol of arboviral transmission. …”
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“…With the implementation of PHP, HTML and JavaScript, users can upload their data for analysis via a user-friendly GUI. …”
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“…To share the PIRSR functional site prediction method with the broader scientific community, we have streamlined our workflow and developed a stand-alone Java software package named PIRSitePredict. We demonstrate the use of PIRSitePredict for functional annotation of de novo assembled genome/transcriptome by annotating uncharacterized proteins from Trinity RNA-seq assembly of embryonic transcriptomes of the following three cartilaginous fishes: Leucoraja erinacea (Little Skate), Scyliorhinus canicula (Small-spotted Catshark) and Callorhinchus milii (Elephant Shark). …”
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“…To help understand if they use aposematism to advertise their venom to conspecifics or predators with different visual systems, we studied a population in Java, Indonesia. Using ImageJ, we selected colours from the facial masks of 58 individuals, converted RBG colours into monochromatic, dichromatic and trichromatic modes, and created a contrast index. …”
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“…These high-resolution models satisfy Hi-C chromosomal contacts well and are consistent with models built at lower (i.e. 1 MB) resolution, and with the data of fluorescent in situ hybridization experiments. The Java source code of Hierarchical3DGenome and its user manual are available here https://github.com/BDM-Lab/Hierarchical3DGenome.…”
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“…A total of 26 lactation dairy cattle breed Friesian Holstein cross breed maintained at individual cage at farm on Kawi Mountain, Malang, East Java. It was randomly allotted to treatment and control group (13 head of cattle in each group). …”
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“…A hitherto unknown Indian Ocean pathway of the ITF was discovered off Sumatra associated with prolonged northwestward flow within the South Java Current. Our analysis uncovers a direct linkage of enhanced ITF waters with the Agulhas Current in the Mozambique Channel from thermocline depths down to intermediate depths, that freshened the Indian Ocean. …”
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“…AVAILABILITY AND IMPLEMENTATION: ABRA2 is implemented in a combination of Java and C/C++ and is freely available to all from: https://github.com/mozack/abra2. …”
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“…DisCVR has been designed as a user-friendly tool for detecting human viruses from HTS data using computers with limited RAM and processing power, and includes a graphical user interface to help users interpret and validate the output. It is written in Java and is publicly available from http://bioinformatics.cvr.ac.uk/discvr.php.…”
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“…The website is implemented in Java, Apache, and MySQL with all major browsers supported.…”
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“…The performance evaluation shows that the proposed middleware framework runs with an overhead of only 6% compared to pure Java-based middleware and is scalable as the number of VMs increases up to 16.…”
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“…Here, a web-browser-oriented solution is presented and demonstrated for metabolic profiling analysis that combines the power of R for back-end statistical analyses and of JavaScript for front-end visualisations and user interactivity. …”
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“…SETTING: The study was conducted at a public nursing school located in urban Surabaya, East Java, Indonesia, in December 2017. PARTICIPANTS: A total of 714 nursing students from four different programmes were involved. …”
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“…Output is presented as a DCN which may be analyzed using a JavaScript-based interactive visualization tool for users to explore statistically significant correlations between disease states of interest using graph-theory-based network topology. …”
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