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  1. 4601
    “…The C++20 compression/decompression code, custom TIFF library and an ImageJ/Fiji Java plugin for reading TRPX files are open-sourced on GitHub under the permissive MIT license.…”
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    TERSE/PROLIX (TRPX) – a new algorithm for fast and lossless compression and decompression of diffraction and cryo-EM data
  2. 4602
    “…The participants from Java had the highest degree of HIV/AIDS knowledge, which was 12.5% higher than participants from Sumatra, Kalimantan, Sulawesi, Papua, and Maluku. …”
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    The knowledge mapping of HIV/AIDS in Indonesians living on six major islands using the Indonesian version of the HIV-KQ-18 instrument
  3. 4603
    “…In terms of delivery place preference, men in age 15–19 and 35–49 years, living in urban areas, having a more stable economy, reading newspapers or magazines as well as watching television at least once a week, and living in Java and Nusa Tenggara, were more likely having wife giving birth in healthcare facilities. …”
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    Men’s determinant factors on antenatal care involvement and childbirth place preference in Indonesia: An analysis of the 2012 Indonesia Demographic and Health Survey (IDHS)
  4. 4604
    “…The intelligent appendicitis diagnostic system was subsequently developed utilizing the Java programming language. Technical evaluation and system usability testing were both done as part of the software evaluation process. …”
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    Development and evaluation of a clinical decision support system for early diagnosis of acute appendicitis
  5. 4605
    “…SCALA is developed in R, Shiny and JavaScript and is mainly available as a standalone version, while an online service of more limited capacity can be found at http://scala.pavlopouloslab.info or https://scala.fleming.gr.…”
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    SCALA: A complete solution for multimodal analysis of single-cell Next Generation Sequencing data
  6. 4606
    “…AVAILABILITY AND IMPLEMENTATION: CoreDetector was developed in the cross platform, and easily deployable, Java language. A packaged pipeline is readily executable in a bash terminal without any external need for Perl or Python environments. …”
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    CoreDetector: a flexible and efficient program for core-genome alignment of evolutionary diverse genomes
  7. 4607
    “…RESULTS: CoreGenes is a global JAVA-based interactive data mining tool that identifies and catalogs a "core" set of genes from two to five small whole genomes simultaneously. …”
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    CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes
  8. 4608
    “…Manuscript Architect was built using Java language in conjunction with the classic lifecycle development method. …”
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    Manuscript Architect: a Web application for scientific writing in virtual interdisciplinary groups
  9. 4609
    “…This requires management of large sets of open reading frames as a prerequisite of the cloning and recombinant expression of these proteins. RESULTS: A Java program was developed for retrieval of protein and nucleic acid sequences and annotations from NCBI GenBank, using the XML sequence format. …”
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    ORFer – retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
  10. 4610
    “…SeqVISTA runs on any operating system with a Java 1.4 virtual machine. It is freely available to academic users at .…”
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    SeqVISTA: a graphical tool for sequence feature visualization and comparison
  11. 4611
    “…The PathSys's client software, named BiologicalNetworks, developed for navigation and analyses of molecular networks, is available as a Java Web Start application at .…”
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    PathSys: integrating molecular interaction graphs for systems biology
  12. 4612
    “…RepbaseSubmitter is a java-based interface for formatting and annotating Repbase entries. …”
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    Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
  13. 4613
    “…RESULTS: We have created a user-friendly java application to facilitate sophisticated visualization and analysis such as cross-tumor and cross-platform comparisons. …”
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    SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes
  14. 4614
    “…This software was developed using Java and runs on Linux, Windows, and Mac OS X. Please contact ayums@ims.u-tokyo.ac.jp if you are interested in the application. …”
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    AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction
  15. 4615
    “…The software is programmed in Java, operates platform independent and can be executed on regular desktop computers. …”
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    The influenza pandemic preparedness planning tool InfluSim
  16. 4616
    “…Additionally, aCGHViewer can display aCGH and expression array data concurrently to visually correlate the two. aCGHViewer is a stand alone Java visualization application that should be used in conjunction with separate statistical programs. …”
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    aCGHViewer: A Generic Visualization Tool For aCGH data
  17. 4617
    “…SOFTWARE ARCHITECTURE: DSPS was developed primarily using Java language running on a Tomcat server and with MySQL database as its backend. …”
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    Duke Surgery Patient Safety: an open-source application for anonymous reporting of adverse and near-miss surgical events
  18. 4618
    “…A platform independent (Java) program package, RetroTector(©) (ReTe), was constructed. …”
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    Automated recognition of retroviral sequences in genomic data—RetroTector(©)
  19. 4619
    “…FORCE is open source and implemented in Java. The software, including the source code, the clustering results for COG and CoryneRegNet, and all evaluation datasets are available at .…”
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    Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
  20. 4620
    “…In addition, by using MVC-based design and Java as a platform-independent programming language, this system provides a potential infrastructure for any domain-specific knowledge base in the biomedical field.…”
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    An open source infrastructure for managing knowledge and finding potential collaborators in a domain-specific subset of PubMed, with an example from human genome epidemiology
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