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  1. 4641
    “…SNPPicker also takes into account user constraints including options for controlling runtime. Perl Scripts, Java source code and executables are available under an open source license for download at http://mayoresearch.mayo.edu/mayo/research/biostat/software.cfm…”
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    SNPPicker: High quality tag SNP selection across multiple populations
  2. 4642
    por Christou, Nicolas, Dinov, Ivo D.
    Publicado 2011
    “…Like all SOCR resources, these confidence interval resources may be openly accessed via an Internet-connected Java-enabled browser. The SOCR confidence interval applet enables the user to empirically explore and investigate the effects of the confidence-level, the sample-size and parameter of interest on the corresponding confidence interval. …”
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    Confidence Interval Based Parameter Estimation—A New SOCR Applet and Activity
  3. 4643
    “…This new format is accompanied by a Java-based application programming interface to help software developers to integrate MIM support into software projects. …”
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    Online Artículo Texto
    A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
  4. 4644
    “…MACSE is distributed as an open-source java file executable with freely available source code and can be used via a web interface at: http://mbb.univ-montp2.fr/macse.…”
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    MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
  5. 4645
    “…METHODS: A total of 90 questionnaires were completed by the dental patients who came to dental polyclinic located in Government Hospital, West Java, Indonesia. The questionnaire was concerned on two dimensions of service quality model, i.e. empathy and responsiveness. …”
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    Patient satisfaction analysis on service quality of dental health care based on empathy and responsiveness
  6. 4646
    “…This flexibility is achieved by employing a three-tier distributed architecture and recent technologies including CORBA middleware, Java, JDBC, and JSP. A CORBA server permits transparent access to a workbench management database, which stores information about the users, their data, as well as the description of all bioinformatics applications that can be launched from the workbench. …”
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    AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis
  7. 4647
    “…Here we show that enhancing the complexity of a rice production system by adding combinations of compost, azolla, ducks, and fish resulted in strongly increased grain yields and revenues in a season with extremely adverse weather conditions on East Java, Indonesia. We found that azolla, duck, and fish increased plant nutrient content, tillering and leaf area expansion, and strongly reduced the density of six different pests. …”
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    Complex agro-ecosystems for food security in a changing climate
  8. 4648
    “…The facility, Pathos (http://motif.gla.ac.uk/Pathos/), employs Java servlets and is underpinned by a relational database populated from the Kyoto Encyclopaedia of Genes and Genomes (KEGG). …”
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    Pathos: A web facility that uses metabolic maps to display experimental changes in metabolites identified by mass spectrometry
  9. 4649
    “…A web server provides links to related sites of interest, binding affinity data, pre-calculated structural information about protein–protein interfaces and 3D interactive views through java applets. Comparison of interfaces in 2P2Idb to those of representative datasets of heterodimeric complexes has led to the identification of geometrical parameters and residue properties to assess the druggability of protein–protein complexes. …”
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    2P2Idb: a structural database dedicated to orthosteric modulation of protein–protein interactions
  10. 4650
    “…RESULTS: We present Screening Assistant 2 (SA2), an open-source JAVA software dedicated to the storage and analysis of small to very large chemical libraries. …”
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    Mining collections of compounds with Screening Assistant 2
  11. 4651
    “…A first implementation of the architecture has been then realized in Java following the object-oriented paradigm and used to instantiate a DDSS example aimed at accurately diagnosing breast masses as a proof of concept. …”
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    An extensible six-step methodology to automatically generate fuzzy DSSs for diagnostic applications
  12. 4652
    por Longabaugh, William JR
    Publicado 2012
    “…It is freely available as an open-source Java application.…”
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    Combing the hairball with BioFabric: a new approach for visualization of large networks
  13. 4653
    “…Using the ‘FASTLipid’ Java library, a database was populated with theoretical lipids, generated from a set of community agreed upon chemical bounds. …”
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    LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics
  14. 4654
    “…The core package is implemented in HTML5, CSS and JavaScript and can be used within any kind of web-based project. …”
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    Biographer: web-based editing and rendering of SBGN compliant biochemical networks
  15. 4655
    “…The reference implementation can be used as a simulation backend for Java™-based programs. Source code, binaries, and documentation can be freely obtained under the terms of the LGPL version 3 from http://simulation-core.sourceforge.net. …”
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    The systems biology simulation core algorithm
  16. 4656
    “…The approaches outlined here, readily extendable to non-morphometric datasets, allow study of the variation in the degree of integration between a priori defined modules. A Java application – that will allow performance of the proposed test using a software with graphical user interface – has also been developed and is available at the Morphometrics at Stony Brook Web page (http://life.bio.sunysb.edu/morph/).…”
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    Resampling-Based Approaches to Study Variation in Morphological Modularity
  17. 4657
    “…CONCLUSION: We present a Java-based implementation of our methods named Seurat, which is made available for free academic use. …”
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    Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs
  18. 4658
    “…The website was implemented in JSP, JavaScript, MySQL, and R.…”
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    SurvExpress: An Online Biomarker Validation Tool and Database for Cancer Gene Expression Data Using Survival Analysis
  19. 4659
    “…Here we report the release of several open-source Java-based software packages based on mzIdentML: ProteoIDViewer, mzidLibrary, and mzidValidator. …”
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    Tools (Viewer, Library and Validator) that Facilitate Use of the Peptide and Protein Identification Standard Format, Termed mzIdentML
  20. 4660
    “…PathNER is implemented in Java and made freely available online at http://sourceforge.net/projects/pathner/.…”
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    PathNER: a tool for systematic identification of biological pathway mentions in the literature
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