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  1. 5061
    “…The Open Source development in Java and R is modular and invites advanced users to extend its functionality. …”
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    ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface
  2. 5062
    “…Neopeptide Analyser is available as a Java application for Mac, Windows and Linux. The analysis features and ease of use encourages data exploration, which could aid the discovery of novel pathways in extracellular matrix degradation, the identification of potential biomarkers and as a tool to investigate matrix turnover. …”
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    Neopeptide Analyser: A software tool for neopeptide discovery in proteomics data
  3. 5063
    “…Information regarding alignment quality and individual amino acid substitutions is displayed with the JavaScript language which provides interactive visualizations for revealing both high-level and low-level alignment information.…”
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    SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment
  4. 5064
    “…None of these likely represents true Anentome helena described from Java, including a specimen purchased through the aquarium trade under this name in the US and one that was recently found introduced in Singapore, both of which were supported as conspecific with a species from Thailand. …”
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    Quid est Clea helena? Evidence for a previously unrecognized radiation of assassin snails (Gastropoda: Buccinoidea: Nassariidae)
  5. 5065
    “…OBJECTIVES: To identify potential demographic and ecological risk factors for human infection with seasonal influenza A viruses in rural Indonesia, a population‐based study was conducted in Cileunyi and Soreang subdistricts near Bandung in western Java from 2008 to 2011. METHODS: Passive influenza surveillance with RT‐PCR confirmation of influenza A viral RNA in respiratory specimens was utilized for case ascertainment. …”
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    Demographic and ecological risk factors for human influenza A virus infections in rural Indonesia
  6. 5066
    “…To add another method to the array of available tools, here we used recent developments in web technology to investigate the technical feasibility of online HyperText Markup Language-5/JavaScript-based video data recording. We employed a preferential looking task with children between 4 and 24 months. …”
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    Looking Tasks Online: Utilizing Webcams to Collect Video Data from Home
  7. 5067
    “…To facilitate this task, a Java based application linked to the treatment planning system has been developed. …”
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    Pre-plan technique feasibility in multi-interstitial/endocavitary perineal gynecological brachytherapy
  8. 5068
    “…We show that integration of prior biological knowledge into the classification as developed in this paper, significantly improves the robustness and generalizability of predictions to independent datasets. We provide a Java code of our algorithm along with a parsed version of the STRING DB database. …”
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    A biological network-based regularized artificial neural network model for robust phenotype prediction from gene expression data
  9. 5069
    “…Here we present High-Throughput Tabular Data Processor (HTDP), a platform independent Java program. HTDP works on any character-delimited column data (e.g. …”
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    High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets
  10. 5070
    por Kavaler, David, Filkov, Vladimir
    Publicado 2018
    “…Questions about well established topics, e.g., the coercion operator in C++, or the difference between canonical and class names in Java, get asked often in one form or another, and answered very quickly. …”
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    Determinants of quality, latency, and amount of Stack Overflow answers about recent Android APIs
  11. 5071
    por Nakatani, Yoichiro, McLysaght, Aoife
    Publicado 2017
    “…AVAILABILITY AND IMPLEMENTATION: The analysis data are available for download at http://www.gen.tcd.ie/molevol/supp_data/MacrosyntenyTGD.zip, and the software written in Java is available upon request. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes
  12. 5072
    “…Soetomo General Hospital, Surabaya, East-Java, Indonesia in 2011 to 2013. RESULTS: In 2011, 69 cases (22.77%) from 303 fluor albus patients, in 2012 69 cases (22.69%) from 304 fluor albus patients, and in 2013 75 cases (28.63%) from 262 fluor albus patients. …”
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    RISK FACTORS OF VULVOVAGINAL CANDIDIASIS IN DERMATO-VENEREOLOGY OUTPATIENTS CLINIC OF SOETOMO GENERAL HOSPITAL, SURABAYA, INDONESIA
  13. 5073
    “…RESULTS: We present miR-MaGiC, a novel miRNA quantification method, implemented as a cross-platform tool in Java. miR-MaGiC performs stringent mapping to a core region of each miRNA and defines a meaningful set of target miRNA sequences by collapsing the miRNA space to “functional groups”. …”
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    miR-MaGiC improves quantification accuracy for small RNA-seq
  14. 5074
    “…Respondent-driven sampling (RDS) was used to recruit 731 women from Greater Jakarta and Bandung, West Java. RDS-II weighted prevalence of any past-year IPV was 68.9% (95% CI 65.0, 72.6) in Jakarta and 55.9% (95% CI 48.0, 63.5) in Bandung. …”
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    Intimate Partner Violence and HIV Sexual Risk Behaviour Among Women Who Inject Drugs in Indonesia: A Respondent-Driven Sampling Study
  15. 5075
    “…METHODS AND RESULTS: To handle the problems described above, we developed a Java web application, DockerBIO, which provides reliable, verified, light-weight Docker images for various bioinformatics tools and for various kinds of reference data. …”
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    DockerBIO: web application for efficient use of bioinformatics Docker images
  16. 5076
    “…The participants are university students enrolled in a Java programming class. One target variable is the placement result based on an examination by a teacher of a class and the ranking results of the programming contest. …”
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    Student placement and skill ranking predictors for programming classes using class attitude, psychological scales, and code metrics
  17. 5077
    “…Immunohistochemical analysis of COX-2 expression was conducted using a commercially available kit and Image Processing and Analysis in Java. The intensity was presented as the percentage of cells with a positive reaction. …”
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    Cyclooxygenase-2 expression in actinic keratosis
  18. 5078
    por Hassan, Hezha, Shanak, Siba
    Publicado 2019
    “…CONCLUSION: GOTrapper is a user-friendly Java tool that helps the user move up and down the ontology tree, which leads to new hypotheses and devising new association of the input genes. …”
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    GOTrapper: a tool to navigate through branches of gene ontology hierarchy
  19. 5079
    “…The Families First Programme, an adaptation of the Positive Discipline in Everyday Parenting Programme to the West Java context, is a parenting support programme anchored on children’s rights that gives parents guidance on child development, parenting and positive discipline practices. …”
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    Protocol for a cluster randomised controlled trial evaluating a parenting with home visitation programme to prevent physical and emotional abuse of children in Indonesia: the Families First Programme
  20. 5080
    “…METHODS: We conducted full household screening for cardiovascular risk factors among adults aged 40 years and older in 8 villages in Malang District, East Java Province, Indonesia, in 2016–2017. 10-year cardiovascular risk scores were calculated based on the World Health Organization/International Society of Hypertension’s region-specific charts that use age, sex, blood pressure, diabetes status and smoking behaviour. …”
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    Cardiovascular disease risk factor prevalence and estimated 10-year cardiovascular risk scores in Indonesia: The SMARThealth Extend study
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