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  1. 5201
    “…Our proposed method found that several new gene regulations involved in these itemsets were useful for biologists and provided further insights into the mechanisms underpinning biological processes. The Java source code and other related materials used in this study are available at “http://websystem.csie.ncku.edu.tw/TIIM_Program.rar”.…”
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    Mining differential top-k co-expression patterns from time course comparative gene expression datasets
  2. 5202
    “…AVAILABILITY AND IMPLEMENTATION: Java source code, binaries and setup instructions are freely available at http://genomes.sapac.edu.au/text_mining/pos_tagger.zip.…”
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    Improved Part-of-Speech Prediction in Suffix Analysis
  3. 5203
    “…On a normal desktop PC, it is common for the connectivity mapping task with a single gene signature to take > 2h to complete using sscMap, a popular Java application that runs on standard CPUs (Central Processing Units). …”
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    cudaMap: a GPU accelerated program for gene expression connectivity mapping
  4. 5204
    “…METHODS: We included ART-naïve HIV patients with a CD4 cell count below 100 cells/μL and no signs of meningitis in an outpatient HIV clinic in Bandung, West Java, Indonesia. Baseline clinical data and follow-up were retrieved from a prospective database, and cryptococcal antigen was measured in stored serum samples using a semiquantitative lateral flow assay. …”
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    Asymptomatic cryptococcal antigenemia is associated with mortality among HIV-positive patients in Indonesia
  5. 5205
    “…No data on the renal involvement of children with HSP in Indonesia, especially West Java. OBJECTIVE: To evaluate renal involvement in children with HSP. …”
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    Age of onset as a risk factor of renal involvement in Henoch-Schönlein purpura
  6. 5206
    “…AVAILABILITY: ModuleRole is implemented in Java and C, and is freely available at http://www.bioinfo.org/modulerole/index.php. …”
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    ModuleRole: A Tool for Modulization, Role Determination and Visualization in Protein-Protein Interaction Networks
  7. 5207
    por Tempel, Sebastien, Talla, Emmanuel
    Publicado 2014
    “…RESULTS: Here we present Visual ModuleOrganizer, a Java graphical interface that enables a new and optimized version of the ModuleOrganizer tool. …”
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    Visual ModuleOrganizer: a graphical interface for the detection and comparative analysis of repeat DNA modules
  8. 5208
    “…It is implemented in Struts 1.3 using a Java backbone and runs atop the open-source Apache Tomcat Server. …”
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    WImpiBLAST: Web Interface for mpiBLAST to Help Biologists Perform Large-Scale Annotation Using High Performance Computing
  9. 5209
    “…It has been developed in Java language and is available at http://hpc.icrisat.cgiar.org/ISMU as a standalone free software.…”
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    An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data
  10. 5210
    “…DESIGN: Interviews were conducted with 19 insured households of three different health insurance programs with a family member that had been hospitalized for severe chronic or acute illnesses in either Banyumas or Margono Sukarjo hospitals in Banyumas, Central Java, Indonesia. A thematic analysis was applied to guide the interpretation of the data. …”
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    The economic impact of the insured patients with severe chronic and acute illnesses: a qualitative approach
  11. 5211
    por Patil, Ashwini, Nakai, Kenta
    Publicado 2014
    “…TimeXNet is implemented in Java as a stand-alone application and supported on Linux, MS Windows and Macintosh. …”
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    TimeXNet: Identifying active gene sub-networks using time-course gene expression profiles
  12. 5212
    “…As a proof of concept, we developed a Java Servlet as reference implementation. RESULTS: The following resources have been identified: Sessions allow data associated with a client to be stored beyond a single request while still maintaining statelessness. …”
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    A RESTful interface to pseudonymization services in modern web applications
  13. 5213
    “…The web-server is supported on all modern browsers with latest Java plug-in. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12859-015-0545-9) contains supplementary material, which is available to authorized users.…”
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    CHEXVIS: a tool for molecular channel extraction and visualization
  14. 5214
    “…In our lab, we developed Transcriptator, a web application based on a computational Python pipeline with a user-friendly Java interface. This pipeline uses the web services available for BLAST (Basis Local Search Alignment Tool), QuickGO and DAVID (Database for Annotation, Visualization and Integrated Discovery) tools. …”
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    Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA
  15. 5215
    “…From January 2014–February 2015 we consecutively recruited a total of 267 patients with dyspeptic symptoms in Java, Papua, Sulawesi, Borneo and Sumatera Island. …”
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    Risk Factors and Prevalence of Helicobacter pylori in Five Largest Islands of Indonesia: A Preliminary Study
  16. 5216
    “…The proposed theoretical representation is based on procedural attachment; moreover, a strong link is maintained between the ontological description of the modelled concepts and the Java programming language which permitted 3D structure estimation and modelling based on a set of oriented images. …”
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    Underwater Photogrammetry and Object Modeling: A Case Study of Xlendi Wreck in Malta
  17. 5217
    “…After an investigation of key components of exergames, relevant ontologies were incorporated, while necessary classes and properties were defined to model these components. A JavaScript framework was also developed in order to apply the ontology to online exergames. …”
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    Towards exergaming commons: composing the exergame ontology for publishing open game data
  18. 5218
    “…MONGKIE was developed in Java based on the NetBeans plugin architecture, thus being OS-independent with intrinsic support of module extension by third-party developers. …”
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    MONGKIE: an integrated tool for network analysis and visualization for multi-omics data
  19. 5219
    “…The Bawean warty pig (Sus blouchi) is an endemic pig species confined to the 192 km(2) large island of Bawean in the Java Sea, Indonesia. Due to a lack of quantitative ecological research, understanding of natural history and conservation requirements have so far been based solely on anecdotal information from interviews with local people and study of captive and museum specimens. …”
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    First Ecological Study of the Bawean Warty Pig (Sus blouchi), One of the Rarest Pigs on Earth
  20. 5220
    “…We test the application of the Public Knowledge Discovery Engine for Java (PKDE4J) system, a natural language processing system designed for information extraction of entities and relations in text, on the relation extraction task using this corpus. …”
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    Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts
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