“…RESULTS: We developed a Java based Essential Dynamics toolkit called JED to compare the ED from multiple protein trajectories. …”
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“…RESULTS: We describe here a new program, named FOUNTAIN, for the management of large sequencing projects . FOUNTAIN uses the JAVA computer language and data storage in a relational database. …”
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“…The service uses open interfaces to be seamless embeddable into database frontends. The JAVA implementation uses highly optimized data structures and streamlined code to provide fast and scalable response for web service calls. …”
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“…Jdpd is an open Java simulation kernel for Molecular Fragment Dissipative Particle Dynamics with parallelizable force calculation, efficient caching options and fast property calculations. …”
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“…Therefore, movement behavior of two individuals of Pteropus vampyrus were examined using an Argos telemetry system, and foraging pattern of Pteropus spp. was directly observed, at West Java province, Indonesia in October 2017. The maximum distance between the location at which bats were released and their furthest roost, recorded via satellite telemetry, was approximately 100 km. …”
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“…BioJava is an open-source project that provides a Java library for processing biological data. …”
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“…BACKGROUND: Comprehensive reports of malaria in Menoreh Hills, Central Java, Indonesia, a unique district cross-boundaries area under three districts and two provinces have been published previously. …”
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“…In order to obtain an overview of the faunal composition of the Myriapoda in an Indonesian forest system, the fauna of the Halimun-Salak National Park in western Java was explored during the dry season (September–October 2015) in the framework of the German-Indonesian INDOBIOSYS project (Indonesian Biodiversity Discovery and Information System). …”
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“…No information about the seroprevalence of T. gondii in Java sparrows (Lonchura oryzivora) is available. …”
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“…To assess the expected inundation hazard, tsunami modeling was conducted based on several scenarios involving large tsunamigenic earthquakes generated by ruptures along segments of the megathrust south of Java. The worst-case scenario, in which the two megathrust segments spanning Java rupture simultaneously, shows that tsunami heights can reach ~ 20 m and ~ 12 m on the south coast of West and East Java, respectively, with an average maximum height of 4.5 m along the entire south coast of Java. …”
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“…We estimated the basic reproduction number for the infected cases in East Java Province for the year 2018 is [Formula: see text]. …”
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“…Further research into whether these health outcomes exist in rural Central Java, Indonesia will be required to better understand this risk.…”
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“…Although application of PCA is straightforward, specialized software to facilitate workflows and analysis of molecular dynamics simulation data to fully harness the power of PCA is lacking. The Java Essential Dynamics inspector (JEDi) software is a major upgrade from the previous JED software. …”
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“…Here, to estimate the magnitude of SARS-CoV-2 infection in East Java, Indonesia, we investigated the prevalence of immunoglobulin G (IgG) antibodies. …”
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“…CONCLUSION: The SCM prevalence in East Java is relatively high and a threat to the dairy industry’s performance. …”
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“…West Java Health Laboratory (WJHL) is one of the many institutions in Indonesia that have sequenced SARS-CoV-2 genome. …”
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