REBASE: a database for DNA restriction and modification: enzymes, genes and genomes

por Roberts, Richard J, Vincze, Tamas, Posfai, Janos, Macelis, Dana
Publicado 2022

SPEED: Single-cell Pan-species atlas in the light of Ecology and Evolution for Development and Diseases

por Chen, Yangfeng, Zhang, Xingliang, Peng, Xi, Jin, Yicheng, Ding, Peiwen, Xiao, Jiedan, Li, Changxiao, Wang, Fei, Chang, Ashley, Yue, Qizhen, Pu, Mingyi, Chen, Peixin, Shen, Jiayi, Li, Mengrou, Jia, Tengfei, Wang, Haoyu, Huang, Li, Guo, Guoji, Zhang, Wensheng, Liu, Hebin, Wang, Xiangdong, Chen, Dongsheng
Publicado 2022

MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput seque...

por Bonin, Nathalie, Doster, Enrique, Worley, Hannah, Pinnell, Lee J, Bravo, Jonathan E, Ferm, Peter, Marini, Simone, Prosperi, Mattia, Noyes, Noelle, Morley, Paul S, Boucher, Christina
Publicado 2022

The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

por Szklarczyk, Damian, Kirsch, Rebecca, Koutrouli, Mikaela, Nastou, Katerina, Mehryary, Farrokh, Hachilif, Radja, Gable, Annika L, Fang, Tao, Doncheva, Nadezhda T, Pyysalo, Sampo, Bork, Peer, Jensen, Lars J, von Mering, Christian
Publicado 2022

HTCA: a database with an in-depth characterization of the single-cell human transcriptome

por Pan, Lu, Shan, Shaobo, Tremmel, Roman, Li, Weiyuan, Liao, Zehuan, Shi, Hangyu, Chen, Qishuang, Zhang, Xiaolu, Li, Xuexin
Publicado 2022

Frontostriatothalamic effective connectivity and dopaminergic function in the psychosis continuum

por Sabaroedin, Kristina, Razi, Adeel, Chopra, Sidhant, Tran, Nancy, Pozaruk, Andrii, Chen, Zhaolin, Finlay, Amy, Nelson, Barnaby, Allott, Kelly, Alvarez-Jimenez, Mario, Graham, Jessica, Yuen, Hok P, Harrigan, Susy, Cropley, Vanessa, Sharma, Sujit, Saluja, Bharat, Williams, Rob, Pantelis, Christos, Wood, Stephen J, O’Donoghue, Brian, Francey, Shona, McGorry, Patrick, Aquino, Kevin, Fornito, Alex
Publicado 2022

FAVOR: functional annotation of variants online resource and annotator for variation across the human genome

por Zhou, Hufeng, Arapoglou, Theodore, Li, Xihao, Li, Zilin, Zheng, Xiuwen, Moore, Jill, Asok, Abhijith, Kumar, Sushant, Blue, Elizabeth E, Buyske, Steven, Cox, Nancy, Felsenfeld, Adam, Gerstein, Mark, Kenny, Eimear, Li, Bingshan, Matise, Tara, Philippakis, Anthony, Rehm, Heidi L, Sofia, Heidi J, Snyder, Grace, Weng, Zhiping, Neale, Benjamin, Sunyaev, Shamil R, Lin, Xihong
Publicado 2022

EDomics: a comprehensive and comparative multi-omics database for animal evo-devo

por Wei, Jiankai, Liu, Penghui, Liu, Fuyun, Jiang, An, Qiao, Jinghan, Pu, Zhongqi, Wang, Bingrou, Zhang, Jin, Jia, Dongning, Li, Yuli, Wang, Shi, Dong, Bo
Publicado 2022

SUMMER: a Mendelian randomization interactive server to systematically evaluate the causal effects of risk factors and circulating biomarkers on pan-cancer survival

por Xin, Junyi, Gu, Dongying, Chen, Silu, Ben, Shuai, Li, Huiqin, Zhang, Zhengdong, Du, Mulong, Wang, Meilin
Publicado 2022

M6AREG: m(6)A-centered regulation of disease development and drug response

por Liu, Shuiping, Chen, Lu, Zhang, Yintao, Zhou, Ying, He, Ying, Chen, Zhen, Qi, Shasha, Zhu, Jinyu, Chen, Xudong, Zhang, Hao, Luo, Yongchao, Qiu, Yunqing, Tao, Lin, Zhu, Feng
Publicado 2022

TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization

por Wang, Xueying, Chen, Lingxi, Liu, Wei, Zhang, Yuanzheng, Liu, Dawei, Zhou, Chenxin, Shi, Shuai, Dong, Jiajie, Lai, Zhengtao, Zhao, Bingran, Zhang, Wenjingyu, Cheng, Haoyue, Li, Shuaicheng
Publicado 2022

BIC: a database for the transcriptional landscape of bacteria in cancer

por Chen, Kai-Pu, Hsu, Chia-Lang, Oyang, Yen-Jen, Huang, Hsuan-Cheng, Juan, Hsueh-Fen
Publicado 2022

ABC portal: a single-cell database and web server for blood cells

por Gao, Xin, Hong, Fang, Hu, Zhenyu, Zhang, Zilong, Lei, Yang, Li, Xiaoyun, Cheng, Tao
Publicado 2022

isomiRdb: microRNA expression at isoform resolution

por Aparicio-Puerta, Ernesto, Hirsch, Pascal, Schmartz, Georges P, Fehlmann, Tobias, Keller, Verena, Engel, Annika, Kern, Fabian, Hackenberg, Michael, Keller, Andreas
Publicado 2022

tatDB: a database of Ago1-mediated targets of transfer RNA fragments

por Guan, Lingyu, Grigoriev, Andrey
Publicado 2022

The Thing Metabolome Repository family (XMRs): comparable untargeted metabolome databases for analyzing sample-specific unknown metabolites

por Sakurai, Nozomu, Yamazaki, Shinichi, Suda, Kunihiro, Hosoki, Ai, Akimoto, Nayumi, Takahashi, Haruya, Shibata, Daisuke, Aoki, Yuichi
Publicado 2022

Ribocentre: a database of ribozymes

por Deng, Jie, Shi, Yaohuang, Peng, Xuemei, He, Yuanlin, Chen, Xiaoxue, Li, Mengxiao, Lin, Xiaowei, Liao, Wenjian, Huang, Yuanyin, Jiang, Taijiao, Lilley, David M J, Miao, Zhichao, Huang, Lin
Publicado 2022

InterPro in 2022

por Paysan-Lafosse, Typhaine, Blum, Matthias, Chuguransky, Sara, Grego, Tiago, Pinto, Beatriz Lázaro, Salazar, Gustavo A, Bileschi, Maxwell L, Bork, Peer, Bridge, Alan, Colwell, Lucy, Gough, Julian, Haft, Daniel H, Letunić, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex
Publicado 2022

Annotation and evaluation of base editing outcomes in multiple cell types using CRISPRbase

por Fan, Jibiao, Shi, Leisheng, Liu, Qi, Zhu, Zhipeng, Wang, Fan, Song, Runxian, Su, Jimeng, Zhou, Degui, Chen, Xiao, Li, Kailong, Xue, Lixiang, Sun, Lichao, Mao, Fengbiao
Publicado 2022

RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication

por Song, Bowen, Wang, Xuan, Liang, Zhanmin, Ma, Jiongming, Huang, Daiyun, Wang, Yue, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia, Liu, Gang, Chen, Kunqi, Wei, Zhen
Publicado 2022