The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain

por Ament, Seth A, Adkins, Ricky S, Carter, Robert, Chrysostomou, Elena, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather H, Degatano, Kylee, Felix, Victor, Gandt, Peter, Garden, Gwenn A, Giglio, Michelle, Herb, Brian R, Khajouei, Farzaneh, Kiernan, Elizabeth, McCracken, Carrie, McDaniel, Kennedy, Nadendla, Suvarna, Nickel, Lance, Olley, Dustin, Orvis, Joshua, Receveur, Joseph P, Schor, Mike, Sonthalia, Shreyash, Tickle, Timothy L, Way, Jessica, Hertzano, Ronna, Mahurkar, Anup A, White, Owen R
Publicado 2022

AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations

por Shen, Wen-Kang, Chen, Si-Yi, Gan, Zi-Quan, Zhang, Yu-Zhu, Yue, Tao, Chen, Miao-Miao, Xue, Yu, Hu, Hui, Guo, An-Yuan
Publicado 2022

GPCRdb in 2023: state-specific structure models using AlphaFold2 and new ligand resources

por Pándy-Szekeres, Gáspár, Caroli, Jimmy, Mamyrbekov, Alibek, Kermani, Ali A, Keserű, György M, Kooistra, Albert J, Gloriam, David E
Publicado 2022

tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data

por Lei, Hao-Tian, Wang, Zhang-Hao, Li, Bin, Sun, Yang, Mei, Shi-Qiang, Yang, Jian-Hua, Qu, Liang-Hu, Zheng, Ling-Ling
Publicado 2022

The Chemical Probes Portal: an expert review-based public resource to empower chemical probe assessment, selection and use

por Antolin, Albert A, Sanfelice, Domenico, Crisp, Alisa, Villasclaras Fernandez, Eloy, Mica, Ioan L, Chen, Yi, Collins, Ian, Edwards, Aled, Müller, Susanne, Al-Lazikani, Bissan, Workman, Paul
Publicado 2022

ASCancer Atlas: a comprehensive knowledgebase of alternative splicing in human cancers

por Wu, Song, Huang, Yue, Zhang, Mochen, Gong, Zheng, Wang, Guoliang, Zheng, Xinchang, Zong, Wenting, Zhao, Wei, Xing, Peiqi, Li, Rujiao, Liu, Zhaoqi, Bao, Yiming
Publicado 2022

LncTarD 2.0: an updated comprehensive database for experimentally-supported functional lncRNA–target regulations in human diseases

por Zhao, Hongying, Yin, Xiangzhe, Xu, Haotian, Liu, Kailai, Liu, Wangyang, Wang, Lixia, Zhang, Caiyu, Bo, Lin, Lan, Xicheng, Lin, Shihua, Feng, Ke, Ning, Shangwei, Zhang, Yunpeng, Wang, Li
Publicado 2022

GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals

por Liu, Xiaonan, Tian, Dongmei, Li, Cuiping, Tang, Bixia, Wang, Zhonghuang, Zhang, Rongqin, Pan, Yitong, Wang, Yi, Zou, Dong, Zhang, Zhang, Song, Shuhui
Publicado 2022

COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas

por Wang, Dapeng, Kumar, Vinod, Burnham, Katie L, Mentzer, Alexander J, Marsden, Brian D, Knight, Julian C
Publicado 2022

MethBank 4.0: an updated database of DNA methylation across a variety of species

por Zhang, Mochen, Zong, Wenting, Zou, Dong, Wang, Guoliang, Zhao, Wei, Yang, Fei, Wu, Song, Zhang, Xinran, Guo, Xutong, Ma, Yingke, Xiong, Zhuang, Zhang, Zhang, Bao, Yiming, Li, Rujiao
Publicado 2022

GPSAdb: a comprehensive web resource for interactive exploration of genetic perturbation RNA-seq datasets

por Guo, Shipeng, Xu, Zhougeng, Dong, Xiangjun, Hu, Dongjie, Jiang, Yanshuang, Wang, Qunxian, Zhang, Jie, Zhou, Qian, Liu, Shengchun, Song, Weihong
Publicado 2022

Genenames.org: the HGNC resources in 2023

por Seal, Ruth L, Braschi, Bryony, Gray, Kristian, Jones, Tamsin E M, Tweedie, Susan, Haim-Vilmovsky, Liora, Bruford, Elspeth A
Publicado 2022

EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2022

por Thakur, Matthew, Bateman, Alex, Brooksbank, Cath, Freeberg, Mallory, Harrison, Melissa, Hartley, Matthew, Keane, Thomas, Kleywegt, Gerard, Leach, Andrew, Levchenko, Mariia, Morgan, Sarah, McDonagh, Ellen M, Orchard, Sandra, Papatheodorou, Irene, Velankar, Sameer, Vizcaino, Juan Antonio, Witham, Rick, Zdrazil, Barbara, McEntyre, Johanna
Publicado 2022

Ribo-uORF: a comprehensive data resource of upstream open reading frames (uORFs) based on ribosome profiling

por Liu, Qi, Peng, Xin, Shen, Mengyuan, Qian, Qian, Xing, Junlian, Li, Chen, Gregory, Richard I
Publicado 2022

TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures

por Dobson, Laszlo, Szekeres, Levente I, Gerdán, Csongor, Langó, Tamás, Zeke, András, Tusnády, Gábor E
Publicado 2022

ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells

por Zheng, Menglin, Okawa, Satoshi, Bravo, Miren, Chen, Fei, Martínez-Chantar, María-Luz, del Sol, Antonio
Publicado 2022

The ProteomeXchange consortium at 10 years: 2023 update

por Deutsch, Eric W, Bandeira, Nuno, Perez-Riverol, Yasset, Sharma, Vagisha, Carver, Jeremy J, Mendoza, Luis, Kundu, Deepti J, Wang, Shengbo, Bandla, Chakradhar, Kamatchinathan, Selvakumar, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan Antonio
Publicado 2022

MGnify: the microbiome sequence data analysis resource in 2023

por Richardson, Lorna, Allen, Ben, Baldi, Germana, Beracochea, Martin, Bileschi, Maxwell L, Burdett, Tony, Burgin, Josephine, Caballero-Pérez, Juan, Cochrane, Guy, Colwell, Lucy J, Curtis, Tom, Escobar-Zepeda, Alejandra, Gurbich, Tatiana A, Kale, Varsha, Korobeynikov, Anton, Raj, Shriya, Rogers, Alexander B, Sakharova, Ekaterina, Sanchez, Santiago, Wilkinson, Darren J, Finn, Robert D
Publicado 2022

Brain Catalog: a comprehensive resource for the genetic landscape of brain-related traits

por Pan, Siyu, Kang, Hongen, Liu, Xinxuan, Lin, Shiqi, Yuan, Na, Zhang, Zhang, Bao, Yiming, Jia, Peilin
Publicado 2022

NPASS database update 2023: quantitative natural product activity and species source database for biomedical research

por Zhao, Hui, Yang, Yuan, Wang, Shuaiqi, Yang, Xue, Zhou, Kaicheng, Xu, Caili, Zhang, Xuyao, Fan, Jiajun, Hou, Dongyue, Li, Xingxiu, Lin, Hanbo, Tan, Ying, Wang, Shanshan, Chu, Xin-Yi, Zhuoma, Dongzhi, Zhang, Fengying, Ju, Dianwen, Zeng, Xian, Chen, Yu Zong
Publicado 2022