TOAST: A novel method for identifying topologically associated domains based on graph auto-encoders and clustering()

por Gong, Haiyan, Zhang, Dawei, Zhang, Xiaotong
Publicado 2023

Biomarker discovery process at binomial decision point (2BDP): Analytical pipeline to construct biomarker panel

por Chakraborty, Nabarun, Lawrence, Alexander, Campbell, Ross, Yang, Ruoting, Hammamieh, Rasha
Publicado 2023

Involving patients in the process: Development of a constipation patient-reported outcome measure for symptoms and quality of life

por Lee, V Vien, Lau, Ni Yin, Blasiak, Agata, Siah, Kewin Tien Ho, Ho, Dean
Publicado 2023

Applying the digital data and the bioinformatics tools in SARS-CoV-2 research

por Tan, Meng, Xia, Jiaxin, Luo, Haitao, Meng, Geng, Zhu, Zhenglin
Publicado 2023

CCLHunter: An efficient toolkit for cancer cell line authentication

por Bu, Congfan, Zheng, Xinchang, Mai, Jialin, Nie, Zhi, Zeng, Jingyao, Qian, Qiheng, Xu, Tianyi, Sun, Yanling, Bao, Yiming, Xiao, Jingfa
Publicado 2023

Comprehensive genomic analysis of Bacillus paralicheniformis strain BP9, pan-genomic and genetic basis of biocontrol mechanism

por Asif, Muhammad, Li-Qun, Zhang, Zeng, Qingchao, Atiq, Muhammad, Ahmad, Khalil, Tariq, Aqil, Al-Ansari, Nadhir, Blom, Jochen, Fenske, Linda, Alodaini, Hissah Abdulrahman, Hatamleh, Ashraf Atef
Publicado 2023

Exploring the landscape of tools and resources for the analysis of long non-coding RNAs

por Ballarino, Monica, Pepe, Gerardo, Helmer-Citterich, Manuela, Palma, Alessandro
Publicado 2023

TWN-FS method: A novel fragment screening method for drug discovery

por Yoon, Hye Ree, Park, Gyoung Jin, Balupuri, Anand, Kang, Nam Sook
Publicado 2023

Evaluation of zero counts to better understand the discrepancies between bulk and single-cell RNA-Seq platforms

por Zyla, Joanna, Papiez, Anna, Zhao, Jun, Qu, Rihao, Li, Xiaotong, Kluger, Yuval, Polanska, Joanna, Hatzis, Christos, Pusztai, Lajos, Marczyk, Michal
Publicado 2023

Data pre-processing for analyzing microbiome data – A mini review

por Zhou, Ruwen, Ng, Siu Kin, Sung, Joseph Jao Yiu, Goh, Wilson Wen Bin, Wong, Sunny Hei
Publicado 2023

Beyond structural bioinformatics for genomics with dynamics characterization of an expanded KRAS mutational landscape

por Ratnasinghe, Brian D., Haque, Neshatul, Wagenknecht, Jessica B., Jensen, Davin R., Valdivia Esparza, Guadalupe K., Leverence, Elise N., Milech De Assuncao, Thiago, Mathison, Angela J., Lomberk, Gwen, Smith, Brian C., Volkman, Brian F., Urrutia, Raul, Zimmermann, Michael T.
Publicado 2023

The effect of estrogen therapy on cerebral metabolism in diabetic female rats

por Wu, Chun-Yi, Lin, Yu-Hsin, Hsieh, Hsin-Hua, Chung, Yi-Hsiu, Hsu, Shih-Ting, Peng, Shin-Lei
Publicado 2023

Mass spectrometry-based analysis of gut microbial metabolites of aromatic amino acids

por Jariyasopit, Narumol, Khoomrung, Sakda
Publicado 2023

Fast end-to-end surface interpretation of SARS-CoV-2 variants by differentiable molecular surface interaction fingerprinting method

por Zheng, Ziyang, Jiao, Yanqi, You, Haixin, An, Junfeng, Sun, Yao
Publicado 2023

CHAPERONg: A tool for automated GROMACS-based molecular dynamics simulations and trajectory analyses

por Yekeen, Abeeb Abiodun, Durojaye, Olanrewaju Ayodeji, Idris, Mukhtar Oluwaseun, Muritala, Hamdalat Folake, Arise, Rotimi Olusanya
Publicado 2023

EnsembleDL-ATG: Identifying autophagy proteins by integrating their sequence and evolutionary information using an ensemble deep learning framework

por Yu, Lezheng, Zhang, Yonglin, Xue, Li, Liu, Fengjuan, Jing, Runyu, Luo, Jiesi
Publicado 2023

Accelerated NLRP3 inflammasome-inhibitory peptide design using a recurrent neural network model and molecular dynamics simulations

por Ahmad, Bilal, Achek, Asma, Farooq, Mariya, Choi, Sangdun
Publicado 2023

Metadata integrity in bioinformatics: Bridging the gap between data and knowledge

por Caliskan, Aylin, Dangwal, Seema, Dandekar, Thomas
Publicado 2023

Mutation density analyses on long noncoding RNA reveal comparable patterns to protein-coding RNA and prognostic value

por Zhang, Troy, Yu, Hui, Bai, Yongsheng, Guo, Yan
Publicado 2023

Analyzing the contribution of vasa vasorum in oxygenation of the aneurysmal wall: A computational study

por Throop, Alexis, Neves, Manoela, Zakerzadeh, Rana
Publicado 2023