The Swiss Pathogen Surveillance Platform – towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata

por Neves, Aitana, Walther, Daniel, Martin-Campos, Trinidad, Barbie, Valerie, Bertelli, Claire, Blanc, Dominique, Bouchet, Gérard, Erard, Frédéric, Greub, Gilbert, Hirsch, Hans H., Huber, Michael, Kaiser, Laurent, Leib, Stephen L., Leuzinger, Karoline, Lazarevic, Vladimir, Mäusezahl, Mirjam, Molina, Jorge, Neher, Richard A., Perreten, Vincent, Ramette, Alban, Roloff, Tim, Schrenzel, Jacques, Seth-Smith, Helena M. B., Stephan, Roger, Terumalai, Dillenn, Wegner, Fanny, Egli, Adrian
Publicado 2023

A global survey of Salmonella plasmids and their associations with antimicrobial resistance

por Robertson, James, Schonfeld, Justin, Bessonov, Kyrylo, Bastedo, Patrick, Nash, John H. E.
Publicado 2023

Whole-genome sequencing and transcriptome-characterized in vitro evolution of aminoglycoside resistance in Mycobacterium tuberculosis

por Wei, Wenjing, Zhao, Yuchuan, Zhang, Chenchen, Yu, Meiling, Wu, Zhuhua, Xu, Liuyue, Peng, Kehao, Wu, Zhilong, Li, Yanxia, Wang, Xuezhi
Publicado 2023

Discovery and biosynthetic assessment of 'Streptomyces ortus' sp. nov. isolated from a deep-sea sponge

por Williams, Sam E., Back, Catherine R., Best, Eleanor, Mantell, Judith, Stach, James E. M., Williams, Tom A., Race, Paul R., Curnow, Paul
Publicado 2023

The evolutionary tale of eight novel plasmids in a colistin-resistant environmental Acinetobacter baumannii isolate

por Prity, Farzana T., Tobin, Liam A., Maharajan, Ram, Paulsen, Ian T., Cain, Amy K., Hamidian, Mehrad
Publicado 2023

Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA

por Joseph, Lavin A., Griswold, Taylor, Vidyaprakash, Eshaw, Im, Sung B., Williams, Grant M., Pouseele, Hannes A., Hise, Kelley B., Carleton, Heather A.
Publicado 2023

Genomic epidemiology of Mycobacterium bovis infection in sympatric badger and cattle populations in Northern Ireland

por Akhmetova, Assel, Guerrero, Jimena, McAdam, Paul, Salvador, Liliana C. M., Crispell, Joseph, Lavery, John, Presho, Eleanor, Kao, Rowland R., Biek, Roman, Menzies, Fraser, Trimble, Nigel, Harwood, Roland, Pepler, P. Theo, Oravcova, Katarina, Graham, Jordon, Skuce, Robin, du Plessis, Louis, Thompson, Suzan, Wright, Lorraine, Byrne, Andrew W., Allen, Adrian R.
Publicado 2023

Fast and cost-effective SARS-CoV-2 variant detection using Oxford Nanopore full-length spike gene sequencing

por Salazar, Cecilia, Ferrés, Ignacio, Paz, Mercedes, Costábile, Alicia, Moratorio, Gonzalo, Moreno, Pilar, Iraola, Gregorio
Publicado 2023

Within–patient and global evolutionary dynamics of Klebsiella pneumoniae ST17

por Hetland, Marit A. K., Hawkey, Jane, Bernhoff, Eva, Bakksjø, Ragna-Johanne, Kaspersen, Håkon, Rettedal, Siren I., Sundsfjord, Arnfinn, Holt, Kathryn E., Löhr, Iren H.
Publicado 2023

Genomic surveillance of multidrug-resistant Klebsiella in Wales reveals persistent spread of Klebsiella pneumoniae ST307 and adaptive evolution of pOXA-48-like plasmids

por David, Sophia, Mentasti, Massimo, Sands, Kirsty, Portal, Edward, Graham, Lee, Watkins, Joanne, Williams, Catie, Healy, Brendan, Spiller, Owen B., Aanensen, David M., Wootton, Mandy, Jones, Lim
Publicado 2023

Challenges in prokaryote pangenomics

por Tonkin-Hill, Gerry, Corander, Jukka, Parkhill, Julian
Publicado 2023

A conserved uORF in the ilvBNC mRNA of Corynebacterium species regulates ilv operon expression

por Narunsky, Aya, Kavita, Kumari, Panchapakesan, Shanker S. S., Fris, Megan E., Breaker, Ronald R.
Publicado 2023

Expanded roles of lactate-sensing LldR in transcription regulation of the Escherichia coli K-12 genome: lactate utilisation and acid resistance

por Anzai, Takumi, Kijima, Kaede, Fujimori, Miki, Nakamoto, Soma, Ishihama, Akira, Shimada, Tomohiro
Publicado 2023

NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource

por Dicks, Jo, Fazal, Mohammed-Abbas, Oliver, Karen, Grayson, Nicholas E., Turnbull, Jake D., Bane, Evangeline, Burnett, Edward, Deheer-Graham, Ana, Holroyd, Nancy, Kaushal, Dorota, Keane, Jacqueline, Langridge, Gemma, Lomax, Jane, McGregor, Hannah, Picton, Steve, Quail, Michael, Singh, Deepak, Tracey, Alan, Korlach, Jonas, Russell, Julie E., Alexander, Sarah, Parkhill, Julian
Publicado 2023

The Gonococcal Genetic Island defines distinct sub-populations of Neisseria gonorrhoeae

por Youngblom, Madison A., Shockey, Abigail C., Callaghan, Melanie M., Dillard, Joseph P., Pepperell, Caitlin S.
Publicado 2023

Development of Kaptive databases for Vibrio parahaemolyticus O- and K-antigen genotyping

por van der Graaf-van Bloois, Linda, Chen, Hongyou, Wagenaar, Jaap A., Zomer, Aldert L.
Publicado 2023

Comparative genome analysis of Sesbania cannabina-nodulating Rhizobium spp. revealing the symbiotic and transferrable characteristics of symbiosis plasmids

por Han, Kunming, Li, Yan, Zhang, Zhenpeng, Sun, Liqin, Wang, En Tao, Li, Yan
Publicado 2023

Genomic epidemiology of Staphylococcus aureus isolated from bloodstream infections in South America during 2019 supports regional surveillance

por Di Gregorio, Sabrina, Vielma, Jesús, Haim, María Sol, Rago, Lucía, Campos, Josefina, Kekre, Mihir, Abrudan, Monica, Famiglietti, Ángela, Canigia, Liliana Fernandez, Rubinstein, Gabriela, Helena von Specht, Martha, Herrera, Melina, Aro, Carolina, Galas, Marcelo, Yarhui, Norah Balderrama, Figueiredo, Agnes, Lincopan, Nilton, Falcon, Miryan, Guillén, Rosa, Camou, Teresa, Varela, Gustavo, Aanensen, David M., Argimón, Silvia, Mollerach, Marta
Publicado 2023

Genomic analysis of 1710 surveillance-based Neisseria gonorrhoeae isolates from the USA in 2019 identifies predominant strain types and chromosomal antimicrobial-resistance determi...

por Reimche, Jennifer L., Clemons, Arvon A., Chivukula, Vasanta L., Joseph, Sandeep J., Schmerer, Matthew W., Pham, Cau D., Schlanger, Karen, St Cyr, Sancta B., Kersh, Ellen N., Gernert, Kim M.
Publicado 2023

Assessment of ferroptosis-associated gene signatures as potential biomarkers for differentiating latent from active tuberculosis in children

por Chen, Liang, Hua, Jie, Dai, Xiaoting, He, Xiaopu
Publicado 2023