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30481“…The relative performance of three popular multi-sample SNP callers, SAMtools, GATK, and GlfMultiples, also varied with the sequencing depth. …”
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30482por Shadnia, Shahin, Soltaninejad, Kambiz, Sohrabi, Farrokh, Rezvani, Manijeh, Barari, Behjat, Abdollahi, Mohammad“…Data such as patient age and sex, identity of the callers, question categories and information resources were obtained from the recorded calls and were analyzed. …”
Publicado 2011
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30483por Tariq, Humeira, Kloseck, Marita, Crilly, Richard G, Gutmanis, Iris, Gibson, Maggie“…BACKGROUND: Fall events were examined in two distinct geriatric populations to identify factors associated with repeat fallers, and to examine whether patients who use gait aids, specifically a walker, were more likely to experience repeat falls. …”
Publicado 2013
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30484“…In multivariable-adjusted analyses, participants classified as frail were over two times more likely to report falls [odds ratio (OR): 2.39, 95% confidence interval (CI): 1.22–4.71, P = 0.01], and participants with a CES-D score 18+ and/or prescribed antidepressants were over 80% more likely to be fallers (OR: 1.83, 95% CI: 1.23–2.74, P = 0.003) than were participants with a CES-D score <18 and no prescribed antidepressants. …”
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30485por Olson, Nathan D., Lund, Steven P., Colman, Rebecca E., Foster, Jeffrey T., Sahl, Jason W., Schupp, James M., Keim, Paul, Morrow, Jayne B., Salit, Marc L., Zook, Justin M.“…Missing, however, is a focus on critical evaluation of variant callers for these genomes. Variant calling is essential for comparative genomics as it yields insights into nucleotide-level organismal differences. …”
Publicado 2015
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30486por Bao, Riyue, Hernandez, Kyle, Huang, Lei, Kang, Wenjun, Bartom, Elizabeth, Onel, Kenan, Volchenboum, Samuel, Andrade, Jorge“…Although there is an abundance of publicly-available software for the detection of germline and somatic variants, concordance is generally limited among variant callers and alignment algorithms. Successful integration of variants detected by multiple methods requires in-depth knowledge of the software, access to high-performance computing resources, and advanced programming techniques. …”
Publicado 2015
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30487“…Furthermore, for NGS data analysis, five read mappers including BWA, TMAP, Bowtie, Bowtie2 and GSNAP and four variant callers including GATK-HaplotypeCaller, SAMTOOLS, Freebayes and VarScan2 pipelines are supported. …”
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30488“…We propose that howl segments could function as ‘identity signals’ and allow receivers to modulate their responses according to the caller’s characteristics. The bark segment increased receivers’ attention levels, providing support for earlier observational claims that barks have an ‘alerting’ function. …”
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30489“…Another type of genotype caller applies to high-coverage sequencing data, requires no prior genotype-frequency estimates, and makes no assumption on the number of alleles at a polymorphic site. …”
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30490por Li, Le, Leung, Alden King-Yung, Kwok, Tsz-Piu, Lai, Yvonne Y. Y., Pang, Iris K., Chung, Grace Tin-Yun, Mak, Angel C. Y., Poon, Annie, Chu, Catherine, Li, Menglu, Wu, Jacob J. K., Lam, Ernest T., Cao, Han, Lin, Chin, Sibert, Justin, Yiu, Siu-Ming, Xiao, Ming, Lo, Kwok-Wai, Kwok, Pui-Yan, Chan, Ting-Fung, Yip, Kevin Y.“…Applying OMSV to a human cell line, we identified hundreds of SVs >2 kbp, with 68 % of them missed by sequencing-based callers. Independent experimental validation confirmed the high accuracy of these SVs. …”
Publicado 2017
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30491por Stanton, Kelly P., Jin, Jiaqi, Lederman, Roy R., Weissman, Sherman M., Kluger, Yuval“…We show that Ritornello generally performs equally or better than the peak callers tested and recommended by the ENCODE consortium, but in contrast, Ritornello does not require a matched total DNA input control to avoid false positives, effectively decreasing the sequencing cost to perform ChIP-seq. …”
Publicado 2017
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30492por Naumenko, Fedor M., Abnizova, Irina I., Beka, Nathan, Genaev, Mikhail A., Orlov, Yuriy L.“…BACKGROUND: The use of artificial data to evaluate the performance of aligners and peak callers not only improves its accuracy and reliability, but also makes it possible to reduce the computational time. …”
Publicado 2018
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30493por Cheng, Peixia, Tan, Liheng, Ning, Peishan, Li, Li, Gao, Yuyan, Wu, Yue, Schwebel, David C., Chu, Haitao, Yin, Huaiqiong, Hu, Guoqing“…Results: A total of 49 trials involving 27,740 participants and 9271 fallers were included. Compared to usual care, multifactorial interventions (MFI) demonstrated the greatest efficacy (OR: 0.64, 95% CrI: 0.53 to 0.77) followed by interventions combining education and exercise (EDU + EXC) (OR: 0.65, 95% CrI: 0.38 to 1.00) and interventions combining exercise and hazard assessment and modification (EXC + HAM) (OR: 0.66, 95% CrI: 0.40 to 1.04). …”
Publicado 2018
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30494“…CONCLUSIONS: We implemented our algorithm in a software named Fuwa and applied it together with 4 well-known variant callers, i.e., Platypus, GATK-UnifiedGenotyper, GATK-HaplotypeCaller and SAMtools, to three sequencing data sets of a well-studied sample NA12878, which were produced by whole-genome, whole-exome and low-coverage whole-genome sequencing technology respectively. …”
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30495por Ferretti, Luca, Tennakoon, Chandana, Silesian, Adrian, Freimanis, Graham, Ribeca, Paolo“…Distinguishing real variants from such noise is not straightforward. Variant callers that can handle pooled samples can be in trouble at extremely high read depths, while at lower depths sensitivity is often sacrificed to specificity. …”
Publicado 2019
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30496por Moriyama, Takuya, Imoto, Seiya, Hayashi, Shuto, Shiraishi, Yuichi, Miyano, Satoru, Yamaguchi, Rui“…Some existing mutation callers have focused on additional information, e.g. heterozygous single-nucleotide polymorphisms (SNPs) nearby mutation candidates or overlapping paired-end read information. …”
Publicado 2019
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30497“…Conclusions: Our results suggest there may be two populations of fallers, the healthy and the disabled, each with their own set of distinct risk factors and triggers. …”
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30498por Mattisson, Marie, Johnson, Christina, Börjeson, Sussanne, Årestedt, Kristofer, Lindberg, Malou“…BACKGROUND: Caller satisfaction with telephone advice nursing (TAN) is generally high, and the interaction is essential. …”
Publicado 2019
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30499por Li, Jiajin, Jew, Brandon, Zhan, Lingyu, Hwang, Sungoo, Coppola, Giovanni, Freimer, Nelson B., Sul, Jae Hoon“…A subset of these variants, however, may have poor sequencing quality due to limitations in NGS or variant callers. In genetic studies that analyze a large number of sequenced individuals, it is critical to detect and remove those variants with poor quality as they may cause spurious findings. …”
Publicado 2019
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30500“…Participants with at least two falls in the prior year were classified as fallers. Each individual was assessed for postural stability during quiet stance and gait stability during 10 meters walking. …”
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