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30561“…CONCLUSIONS: Cancer Information and Support nurses internationally act as expert navigators, educators and compassionate communicators who ‘listen between the lines’ to enable callers to better understand and contextualise their situation and discuss it with their healthcare team and family and friends. …”
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30562por Peach, Tamsin, Pollock, Kristian, van der Wardt, Veronika, das Nair, Roshan, Logan, Pip, Harwood, Rowan H“…Some worried about falls, but many resisted identifying themselves as potential ‘fallers’, even despite having fallen, and rejected the idea of needing the help that structured interventions signify. …”
Publicado 2017
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30563por Huang, August Yue, Zhang, Zheng, Ye, Adam Yongxin, Dou, Yanmei, Yan, Linlin, Yang, Xiaoxu, Zhang, Yuehua, Wei, Liping“…We evaluate the accuracy of MosaicHunter on both simulated and real data and demonstrate that it has improved performance compared with other somatic mutation callers. We further demonstrate that incorporating sequencing data of the parents can be an effective approach to significantly improve the accuracy of detecting SNMs in an individual when a matched control sample is unavailable. …”
Publicado 2017
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30564por Navarro, Javier, Nevado, Bruno, Hernández, Porfidio, Vera, Gonzalo, Ramos-Onsins, Sebastián E“…The most popular single-nucleotide polymorphism (SNP) callers are designed to obtain a high SNP recovery and low false discovery rate but are not designed to account appropriately the frequency of the variants. …”
Publicado 2017
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30565por Tsunoyama, Taichiro, Nakahara, Shinji, Yoshida, Masafumi, Kitamura, Maki, Sakamoto, Tetsuya“…After the program, provision of oral guidance to callers slightly increased from 63% of cases to 69% (P = 0.13) and implementation of chest compression on patients by bystanders significantly increased from 40% to 52% (P = 0.01). …”
Publicado 2017
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30566“…We highlighted how the current variant calling standards miss homozygous reference disease variants in these sites and provided a bioinformatic panel that can be used to screen these variants using commonly available variant callers. We present exome sequencing results from an individual with venous thrombosis to emphasize how pathogenic alleles in clinically relevant variants escape variant calling while non-pathogenic alleles are detected. …”
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30567“…The speed and consistency of naming the call type predicted the speed and consistency of inferring the caller’s emotion, suggesting that acoustic and emotional categorizations are closely related. …”
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30568por Neums, Lisa, Suenaga, Seiji, Beyerlein, Peter, Anders, Sara, Koestler, Devin, Mariani, Andrea, Chien, Jeremy“…RESULTS: We investigated the feasibility of uncovering mutations from expressed genes using RNA sequencing datasets with a method called Variant Detection in RNA(VaDiR) that integrates 3 variant callers, namely: SNPiR, RVBoost, and MuTect2. The combination of all 3 methods, which we called Tier 1 variants, produced the highest precision with true positive mutations from RNA-seq that could be validated at the DNA level. …”
Publicado 2017
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30569por Sun, Zhifu, Bhagwate, Aditya, Prodduturi, Naresh, Yang, Ping, Kocher, Jean-Pierre A“…This study evaluates commonly used RNA-seq analysis programs along with variant and somatic mutation callers in a series of data sets with simulated and known indels. …”
Publicado 2017
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30570“…To resolve this question, we studied the robustness of allele frequency distributions to the mutation callers MuTect, SomaticSniper, and VarScan in 4722 cancer samples from The Cancer Genome Atlas. …”
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30571por Narzisi, Giuseppe, Corvelo, André, Arora, Kanika, Bergmann, Ewa A., Shah, Minita, Musunuri, Rajeeva, Emde, Anne-Katrin, Robine, Nicolas, Vacic, Vladimir, Zody, Michael C.“…Here we present Lancet, an accurate and sensitive somatic variant caller, which detects SNVs and indels by jointly analyzing reads from tumor and matched normal samples using colored de Bruijn graphs. …”
Publicado 2018
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30572por Levréro, Florence, Touitou, Sonia, Frédet, Julia, Nairaud, Baptiste, Guéry, Jean-Pascal, Lemasson, Alban“…We also found that vocal sharing rate (production rate of shared acoustic variants within each given dyad) was mostly explained by the age difference of callers, as other individual characteristics (sex, kinship) and social parameters (affinity in spatial proximity and in vocal interactions) were not. …”
Publicado 2019
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30573“…We found that the median gap between the turns of two callers was 250 ms. Call intervals varied among individuals, suggesting that call intervals were not fixed among individuals. …”
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30574“…Without using matched control datasets, AIControl identified peaks that were more enriched for putative binding sites than those identified by other popular peak callers that used a matched control dataset. We also demonstrated that our framework identifies binding sites that recover documented protein interactions more accurately.…”
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30575por Ngo, Chau Quy, Phan, Phuong Thu, Vu, Giap Van, Pham, Quyen Thi Le, Chu, Hanh Thi, Pham, Kiet Tuan Huy, Tran, Bach Xuan, Do, Huyen Phuc, Nguyen, Cuong Tat, Tran, Tung Thanh, Ha, Giang Hai, Dang, Anh Kim, Nguyen, Huong Thi Lan, Latkin, Carl A., Ho, Cyrus S.H., Ho, Roger C.M.“…This study has examined the impact of national telephone counselling for smoking cessation and has identified the factors associated with the impact of the quitline among male callers in Vietnam. A randomized cross-sectional survey of 469 smokers who sought smoking cessation services via the national quitline was performed from September 2015 to May 2016. …”
Publicado 2019
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30576“…CONCLUSION: Our results indicate that, although SV genotyping software methods have superior performance to SV callers, there are limitations that suggest the need for further innovation.…”
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30577“…METHODS: Patients telephoning a UK general practice to request an appointment between December 2017 and March 2018 heard announcements regarding management of the common cold. The percentage of callers choosing to continue to speak to a receptionist was compared with baseline data prior to the intervention. …”
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30578por Arora, Kanika, Shah, Minita, Johnson, Molly, Sanghvi, Rashesh, Shelton, Jennifer, Nagulapalli, Kshithija, Oschwald, Dayna M., Zody, Michael C., Germer, Soren, Jobanputra, Vaidehi, Carter, Jade, Robine, Nicolas“…We designed and implemented a novel pipeline for the analysis of tumor-normal samples, using multiple variant callers. We show that coupled with a high-confidence filtering strategy, the use of combination of tools improves the accuracy of somatic variant calling. …”
Publicado 2019
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30579“…All tarsier phrases exhibited some degree of overlap between callers, and tarsiers exhibited high temporal precision in their note output relative to their partners. …”
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30580por Giguere, Collin, Dubey, Harsh Vardhan, Sarsani, Vishal Kumar, Saddiki, Hachem, He, Shai, Flaherty, Patrick“…Our tool uses a simple configuration file to define the experimental arrangement and can be integrated into software pipelines for testing of variant callers or other genomic tools. CONCLUSIONS: The DNA sequencing data generated by our simulator is representative of real data and integrates seamlessly with standard downstream analysis tools.…”
Publicado 2020
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