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5061por George, Jerrin Thomas, Acree, Christopher, Park, Jung-Un, Kong, Muwen, Wiegand, Tanner, Pignot, Yanis Luca, Kellogg, Elizabeth H., Greene, Eric C., Sternberg, Samuel H.“…Collectively, our results reveal the importance of dissecting target site selection mechanisms and highlight new opportunities to leverage CAST systems for accurate, kilobase-scale genome engineering applications.…”
Publicado 2023
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5062por Fuhrmeister, Erica R, Harvey, Abigail P, Nadimpalli, Maya L, Gallandat, Karin, Ambelu, Argaw, Arnold, Benjamin F, Brown, Joe, Cumming, Oliver, Earl, Ashlee M, Kang, Gagandeep, Kariuki, Samuel, Levy, Karen, Pinto Jimenez, Chris E, Swarthout, Jenna M, Trueba, Gabriel, Tsukayama, Pablo, Worby, Colin J, Pickering, Amy J“…The mean abundance of ARGs, in units of log(10) ARG fragments per kilobase per million mapped reads classified as bacteria, was highest in Africa compared with Europe (p=0·014), North America (p=0·0032), and the Western Pacific (p=0·011), and second highest in South-East Asia compared with Europe (p=0·047) and North America (p=0·014). …”
Publicado 2023
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5063por Highlander, Sarah K, Hultén, Kristina G, Qin, Xiang, Jiang, Huaiyang, Yerrapragada, Shailaja, Mason, Edward O, Shang, Yue, Williams, Tiffany M, Fortunov, Régine M, Liu, Yamei, Igboeli, Okezie, Petrosino, Joseph, Tirumalai, Madhan, Uzman, Akif, Fox, George E, Cardenas, Ana Maria, Muzny, Donna M, Hemphill, Lisa, Ding, Yan, Dugan, Shannon, Blyth, Peter R, Buhay, Christian J, Dinh, Huyen H, Hawes, Alicia C, Holder, Michael, Kovar, Christie L, Lee, Sandra L, Liu, Wen, Nazareth, Lynne V, Wang, Qiaoyan, Zhou, Jianling, Kaplan, Sheldon L, Weinstock, George M“…In USA300-MRSA 2658 chromosomal open reading frames were predicted and 3.1 and 27 kilobase (kb) plasmids were identified. USA300-MSSA contained a 20 kb plasmid with some homology to the 27 kb plasmid found in USA300-MRSA. …”
Publicado 2007
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5064por Alonso, Alicia, Fritz, Björn, Hasson, Dan, Abrusan, György, Cheung, Fanny, Yoda, Kinya, Radlwimmer, Bernhard, Ladurner, Andreas G, Warburton, Peter E“…Using a higher resolution polymerase chain reaction (PCR)-amplicon microarray spanning the neocentromere, we find that the CENP-A chromatin is discontinuous, consisting of a major domain of about 87.8 kilobases (kb) and a minor domain of about 13.2 kb, separated by an approximately 158 kb region devoid of CENPs. …”
Publicado 2007
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5065por Yamamoto, Kimiko, Nohata, Junko, Kadono-Okuda, Keiko, Narukawa, Junko, Sasanuma, Motoe, Sasanuma, Shun-ichi, Minami, Hiroshi, Shimomura, Michihiko, Suetsugu, Yoshitaka, Banno, Yutaka, Osoegawa, Kazutoyo, de Jong, Pieter J, Goldsmith, Marian R, Mita, Kazuei“…RESULTS: We mapped 1,755 single nucleotide polymorphism (SNP) markers from bacterial artificial chromosome (BAC) end sequences onto 28 linkage groups using a recombining male backcross population, yielding an average inter-SNP distance of 0.81 cM (about 270 kilobases). We constructed 6,221 contigs by fingerprinting clones from three BAC libraries digested with different restriction enzymes, and assigned a total of 724 single copy genes to them by BLAST (basic local alignment search tool) search of the BAC end sequences and high-density BAC filter hybridization using expressed sequence tags as probes. …”
Publicado 2008
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5066por Bourgogne, Agathe, Garsin, Danielle A, Qin, Xiang, Singh, Kavindra V, Sillanpaa, Jouko, Yerrapragada, Shailaja, Ding, Yan, Dugan-Rocha, Shannon, Buhay, Christian, Shen, Hua, Chen, Guan, Williams, Gabrielle, Muzny, Donna, Maadani, Arash, Fox, Kristina A, Gioia, Jason, Chen, Lei, Shang, Yue, Arias, Cesar A, Nallapareddy, Sreedhar R, Zhao, Meng, Prakash, Vittal P, Chowdhury, Shahreen, Jiang, Huaiyang, Gibbs, Richard A, Murray, Barbara E, Highlander, Sarah K, Weinstock, George M“…RESULTS: The 2,739,625 base pair chromosome of OG1RF was found to contain approximately 232 kilobases unique to this strain compared to V583, the only publicly available sequenced strain. …”
Publicado 2008
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5067por Schaap, Mireille, Lemmers, Richard JLF, Maassen, Roel, van der Vliet, Patrick J, Hoogerheide, Lennart F, van Dijk, Herman K, Baştürk, Nalan, de Knijff, Peter, van der Maarel, Silvère M“…BACKGROUND: Macrosatellite repeats (MSRs), usually spanning hundreds of kilobases of genomic DNA, comprise a significant proportion of the human genome. …”
Publicado 2013
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5068por Woehle, Christian, Kusdian, Gary, Radine, Claudia, Graur, Dan, Landan, Giddy, Gould, Sven B“…RESULTS: Among transcriptome data we found thousands of instances, in which reads mapped onto genomic loci not annotated as genes, some reaching up to several kilobases in length. At first sight these appear to represent long non-coding RNAs (lncRNAs), however, about half of these lncRNAs have significant sequence similarities to genomic loci annotated as protein-coding genes. …”
Publicado 2014
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5069por Samanas, Nyssa Becker, Commers, Tessa W., Dennison, Kirsten L., Harenda, Quincy Eckert, Kurz, Scott G., Lachel, Cynthia M., Wavrin, Kristen Leland, Bowler, Michael, Nijman, Isaac J., Guryev, Victor, Cuppen, Edwin, Hubner, Norbert, Sullivan, Ruth, Vezina, Chad M., Shull, James D.“…Data presented herein localize Renag1 to a 379 kilobase (kb) interval that contains a single protein coding gene, Kit (v-kit Hardy-Zukerman 4 feline sarcoma viral oncogene homolog); identify an endogenous retrovirus-derived long terminal repeat located within Kit intron 1 as the probable causal variant; demonstrate aberrant development of the nephric duct in the anticipated number of ACI rat embryos; and demonstrate expression of Kit and Kit ligand (Kitlg) in the nephric duct. …”
Publicado 2015
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5070por Lin, Benjamin R., Le, Derek J., Chen, Yabin, Wang, Qiwei, Chung, D. Doug, Frausto, Ricardo F., Croasdale, Christopher, Yee, Richard W., Hejtmancik, Fielding J., Aldave, Anthony J.“…Identified variants were filtered for those that were: located in the linked interval on chromosome 10q23-q24; novel or rare (minor allele frequency ≤0.01); heterozygous; present in all affected individuals and not in controls; and present in genes that encode proteins expressed in human corneal epithelial cells (reads per kilobase per million ≥1). Sanger sequencing of identified variants (SNVs) was performed in additional family members. …”
Publicado 2016
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5071“…This interaction was notable in that rs910652 is located within 78 kilobases of ADAM33, which is one of the most well studied asthma susceptibility genes. …”
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5072por Bakhoum, Mame T., Fall, Assane G., Fall, Moussa, Bassene, Chiavaroli K., Baldet, Thierry, Seck, Momar T., Bouyer, Jérémy, Garros, Claire, Gimonneau, Geoffrey“…METHODS: We investigate twelve putative larval habitats (habitat types) of Culicoides inside and outside of three horse farms in the Niayes area of Senegal using a combination of flotation and emergence methods during four collection sessions. …”
Publicado 2016
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5073por Amambua-Ngwa, Alfred, Danso, Bakary, Worwui, Archibald, Ceesay, Sukai, Davies, Nwakanma, Jeffries, David, D’Alessandro, Umberto, Conway, David“…RESULTS: A region of high linkage disequilibrium spanning over 170 kilobases (kb) was identified with both NGS and laboratory determined microsatellite alleles. …”
Publicado 2016
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5074por Adrian-Kalchhauser, Irene, Svensson, Ola, Kutschera, Verena E., Alm Rosenblad, Magnus, Pippel, Martin, Winkler, Sylke, Schloissnig, Siegfried, Blomberg, Anders, Burkhardt-Holm, Patricia“…Usually, vertebrate mitochondrial genomes measure between 16.5 and 17 kilobases (kb). RESULTS: During genome sequencing projects for two novel vertebrate models, the invasive round goby and the sand goby, we found that the sand goby genome is exceptionally small (16.4 kb), while the mitochondrial genome of the round goby is much larger than expected for a vertebrate. …”
Publicado 2017
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5075por Tong, Chao, Chen, Qiaoling, Zhao, Lili, Ma, Junfei, Ibeagha-Awemu, Eveline M., Zhao, Xin“…In addition, targeted genes for 10 lincRNAs with the highest fragments per kilobase of transcript per million fragments mapped (FPKM) were predicted by LncTar for forecasting potential biological functions of these lincRNAs. …”
Publicado 2017
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5076por Hernández, José Ángel, Sánchez-Andrade, Rita, Cazapal-Monteiro, Cristiana Filipa, Arroyo, Fabián Leonardo, Sanchís, Jaime Manuel, Paz-Silva, Adolfo, Arias, María Sol“…Fecal samples were analyzed by the flotation method to estimate the reduction in the fecal egg counts (FECR), the percentage of horses shedding eggs (PHR), and the egg reappearance period (ERP). …”
Publicado 2018
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5077por Uiterwijk, Mathilde, Nijsse, Rolf, Kooyman, Frans N. J., Wagenaar, Jaap A., Mughini-Gras, Lapo, Koop, Gerrit, Ploeger, Harm W.“…METHODS: Fecal samples from 573 dogs originating from four populations (household dogs, shelter dogs, hunting dogs and clinical dogs) were examined with centrifugation sedimentation flotation (CSF) coproscopical analysis, direct immunofluorescence assay (DFA, Merifluor Cryptosporidium/Giardia®), a rapid enzyme immunochromatographic assay (IDEXX SNAP Giardia®) and qPCR (SSU rDNA) for presence of G. duodenalis. …”
Publicado 2018
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5078por Ortiz-Rodriguez, José M., Ortega-Ferrusola, Cristina, Gil, María C., Martín-Cano, Francisco E., Gaitskell-Phillips, Gemma, Rodríguez-Martínez, Heriberto, Hinrichs, Katrin, Álvarez-Barrientos, Alberto, Román, Ángel, Peña, Fernando J.“…Significant differences in transcripts per kilobase million (TPM) were determined using (i) genes for which the expression difference between treatments was higher than 99% of that in the random case (P < 0.01), and (ii) genes for which the fold change was ≥ 2, to avoid expression bias in selection of the candidate genes. …”
Publicado 2019
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5079por Campbell, Michael C., Ashong, Bryan, Teng, Shaolei, Harvey, Jayla, Cross, Christopher N.“…To address this gap in knowledge, we examined sequence variation across ~ 10 kilobases (kbs), encompassing LTα and the upstream region, in 2039 individuals from the 1000 Genomes Project originating from 21 global populations. …”
Publicado 2019
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5080“…A subset of cats exhibiting signs of upper respiratory disease or diarrhea had been tested for infections by PCR and fecal flotation for treatment planning. Mycoplasma felis (78%), calicivirus (78%), and Streptococcus equi subspecies zooepidemicus (55%) were the most common respiratory infections. …”
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