Cargando…

Strategies for optimizing CITE-seq for human islets and other tissues

Defining the immunological landscape of human tissue is an important area of research, but challenges include the impact of tissue disaggregation on cell phenotypes and the low abundance of immune cells in many tissues. Here, we describe methods to troubleshoot and standardize Cellular Indexing of T...

Descripción completa

Detalles Bibliográficos
Autores principales:	Colpitts, Sarah J., Budd, Matthew A., Monajemi, Mahdis, Reid, Kyle T., Murphy, Julia M., Ivison, Sabine, Verchere, C. Bruce, Levings, Megan K., Crome, Sarah Q.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2023
Materias:	Immunology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10014726/ https://www.ncbi.nlm.nih.gov/pubmed/36936943 http://dx.doi.org/10.3389/fimmu.2023.1107582

Ejemplares similares

Advances and Challenges in Islet Transplantation: Islet Procurement Rates and Lessons Learned from Suboptimal Islet Transplantation
por: Plesner, Annette, et al.
Publicado: (2011)

Bibliometric analysis of the top-cited articles on islet transplantation
por: Pu, Qiang-Hong, et al.
Publicado: (2017)

A small molecule improves diabetes in mice expressing human islet amyloid polypeptide
por: Bhagat, Vriti, et al.
Publicado: (2023)

Islet Remodeling in Female Mice with Spontaneous Autoimmune and Streptozotocin-Induced Diabetes
por: Plesner, Annette, et al.
Publicado: (2014)

Improving Islet Engraftment by Gene Therapy
por: Wang, Xiaojie, et al.
Publicado: (2011)

Comprehensive benchmarking of CITE-seq versus DOGMA-seq single cell multimodal omics
por: Xu, Zhongli, et al.
Publicado: (2022)

T cells accumulate in non-diabetic islets during ageing
por: Denroche, Heather C., et al.
Publicado: (2021)

Titration of 124 antibodies using CITE-Seq on human PBMCs
por: Nettersheim, Felix Sebastian, et al.
Publicado: (2022)

Artificial-cell-type aware cell-type classification in CITE-seq
por: Lian, Qiuyu, et al.
Publicado: (2020)

Tissue-Dependent Adaptations and Functions of Innate Lymphoid Cells
por: Murphy, Julia M., et al.
Publicado: (2022)

Immunoregulatory functions of innate lymphoid cells
por: Crome, Sarah Q., et al.
Publicado: (2018)

Small Interfering RNA–Mediated Suppression of Proislet Amyloid Polypeptide Expression Inhibits Islet Amyloid Formation and Enhances Survival of Human Islets in Culture
por: Marzban, Lucy, et al.
Publicado: (2008)

CD47-ligation induced cell death in T-acute lymphoblastic leukemia
por: Leclair, Pascal, et al.
Publicado: (2018)

Dynamic thresholding and tissue dissociation optimization for CITE-seq identifies differential surface protein abundance in metastatic melanoma
por: Lischetti, Ulrike, et al.
Publicado: (2023)

Longitudinal CITE-Seq profiling of chronic lymphocytic leukemia during ibrutinib treatment: evolution of leukemic and immune cells at relapse
por: Cadot, Sarah, et al.
Publicado: (2020)

Islet amyloid polypeptide does not suppress pancreatic cancer
por: Taylor, Austin J., et al.
Publicado: (2023)

Clustering CITE-seq data with a canonical correlation-based deep learning method
por: Yuan, Musu, et al.
Publicado: (2022)

Islet Macrophages Shift to a Reparative State following Pancreatic Beta-Cell Death and Are a Major Source of Islet Insulin-like Growth Factor-1
por: Nackiewicz, Dominika, et al.
Publicado: (2019)

PyMINEr Finds Gene and Autocrine-Paracrine Networks from Human Islet scRNA-Seq
por: Tyler, Scott R., et al.
Publicado: (2019)

Sex Differences in Coronary Artery Disease and Diabetes Revealed by scRNA-Seq and CITE-Seq of Human CD4+ T Cells
por: Saigusa, Ryosuke, et al.
Publicado: (2022)

Comprehensive Characterization of the Multiple Myeloma Immune Microenvironment Using Integrated scRNA-seq, CyTOF, and CITE-seq Analysis
por: Yao, Lijun, et al.
Publicado: (2022)

Patch‐seq shows the heterogeneity of pancreatic islet cells
por: Asahara, Shun‐ichiro
Publicado: (2021)

Erratum. Small Interfering RNA—Mediated Suppression of Proislet Amyloid Polypeptide Expression Inhibits Islet Amyloid Formation and Enhances Survival of Human Islets in Culture. Diabetes 2008;57:3045—3055
por: Marzban, Lucy, et al.
Publicado: (2016)

SORLA mediates endocytic uptake of proIAPP and protects against islet amyloid deposition
por: Shih, Alexis Z.L., et al.
Publicado: (2022)

Emerging complexities of APOBEC3G action on immunity and viral fitness during HIV infection and treatment
por: Monajemi, Mahdis, et al.
Publicado: (2012)

Spatial-CITE-seq: spatially resolved high-plex protein and whole transcriptome co-mapping
por: Liu, Yang, et al.
Publicado: (2022)

Characterization of spleen and lymph node cell types via CITE-seq and machine learning methods
por: Li, Hao, et al.
Publicado: (2022)

High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq
por: Liu, Yang, et al.
Publicado: (2023)

The 100 Most Frequently Cited Articles on Myopia
por: Shemesh, Rachel, et al.
Publicado: (2023)

Integrins and ERp57 Coordinate to Regulate Cell Surface Calreticulin in Immunogenic Cell Death
por: Liu, Chi-Chao, et al.
Publicado: (2019)

Top-Down Proteomics of Mouse Islets With Beta Cell CPE Deletion Reveals Molecular Details in Prohormone Processing
por: Fulcher, James M, et al.
Publicado: (2023)

Multimodal hierarchical classification of CITE-seq data delineates immune cell states across lineages and tissues
por: Caron, Daniel P., et al.
Publicado: (2023)

Bibliometric analysis of the top-cited gastroenterology and hepatology articles
por: Azer, Samy A, et al.
Publicado: (2016)

B7-H4 Pathway in Islet Transplantation and β-Cell Replacement Therapies
por: Wang, Xiaojie, et al.
Publicado: (2011)

Efficient and stable CRISPR/Cas9-mediated genome-editing of human type 2 innate lymphoid cells
por: Audouze-Chaud, Johanne, et al.
Publicado: (2023)

Acquisition of murine splenic myeloid cells for protein and gene expression profiling by advanced flow cytometry and CITE-seq
por: Rødahl, Inga, et al.
Publicado: (2021)

The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow
por: Mercatelli, Daniele, et al.
Publicado: (2021)

On the advancement of highly cited research in China: An analysis of the Highly Cited database
por: Li, John Tianci
Publicado: (2018)

miR-33a Modulates ABCA1 Expression, Cholesterol Accumulation, and Insulin Secretion in Pancreatic Islets
por: Wijesekara, Nadeeja, et al.
Publicado: (2012)

The Top 50 Most Cited Articles in Cartilage Regeneration
por: Mc Donald, Ciaran K., et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_7h9th076ohl566lle542ijogg3