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EasyCellType: marker-based cell-type annotation by automatically querying multiple databases

MOTIVATION: Cell label annotation is a challenging step in the analysis of single-cell RNA sequencing (scRNA-seq) data, especially for tissue types that are less commonly studied. The accumulation of scRNA-seq studies and biological knowledge leads to several well-maintained cell marker databases. M...

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Detalles Bibliográficos
Autores principales: Li, Ruoxing, Zhang, Jianjun, Li, Ziyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10049754/
https://www.ncbi.nlm.nih.gov/pubmed/36998720
http://dx.doi.org/10.1093/bioadv/vbad029