TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches

Transposable Element MOnitoring with LOng-reads (TrEMOLO) is a new software that combines assembly- and mapping-based approaches to robustly detect genetic elements called transposable elements (TEs). Using high- or low-quality genome assemblies, TrEMOLO can detect most TE insertions and deletions a...

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Detalles Bibliográficos
Autores principales: Mohamed, Mourdas, Sabot, François, Varoqui, Marion, Mugat, Bruno, Audouin, Katell, Pélisson, Alain, Fiston-Lavier, Anna-Sophie, Chambeyron, Séverine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10069131/
https://www.ncbi.nlm.nih.gov/pubmed/37013657
http://dx.doi.org/10.1186/s13059-023-02911-2

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10069131/
https://www.ncbi.nlm.nih.gov/pubmed/37013657
http://dx.doi.org/10.1186/s13059-023-02911-2

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