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Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis

Ribosomally synthesized and post-translationally modified peptide natural products have provided many highly unusual scaffolds. This includes the intriguing alkaloids crocagins, which possess a tetracyclic core structure and whose biosynthesis has remained enigmatic. Here we use in vitro experiments...

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Autores principales: Adam, Sebastian, Zheng, Dazhong, Klein, Andreas, Volz, Carsten, Mullen, William, Shirran, Sally L., Smith, Brian O., Kalinina, Olga V., Müller, Rolf, Koehnke, Jesko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10070186/
https://www.ncbi.nlm.nih.gov/pubmed/36894702
http://dx.doi.org/10.1038/s41557-023-01153-w
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author Adam, Sebastian
Zheng, Dazhong
Klein, Andreas
Volz, Carsten
Mullen, William
Shirran, Sally L.
Smith, Brian O.
Kalinina, Olga V.
Müller, Rolf
Koehnke, Jesko
author_facet Adam, Sebastian
Zheng, Dazhong
Klein, Andreas
Volz, Carsten
Mullen, William
Shirran, Sally L.
Smith, Brian O.
Kalinina, Olga V.
Müller, Rolf
Koehnke, Jesko
author_sort Adam, Sebastian
collection PubMed
description Ribosomally synthesized and post-translationally modified peptide natural products have provided many highly unusual scaffolds. This includes the intriguing alkaloids crocagins, which possess a tetracyclic core structure and whose biosynthesis has remained enigmatic. Here we use in vitro experiments to demonstrate that three proteins, CgnB, CgnC and CgnE, are sufficient for the production of the hallmark tetracyclic crocagin core from the precursor peptide CgnA. The crystal structures of the homologues CgnB and CgnE reveal them to be the founding members of a peptide-binding protein family and allow us to rationalize their distinct functions. We further show that the hydrolase CgnD liberates the crocagin core scaffold, which is subsequently N-methylated by CgnL. These insights allow us to propose a biosynthetic scheme for crocagins. Bioinformatic analyses based on these data led to the discovery of related biosynthetic pathways that may provide access to a structurally diverse family of peptide-derived pyrroloindoline alkaloids. [Image: see text]
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spelling pubmed-100701862023-04-05 Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis Adam, Sebastian Zheng, Dazhong Klein, Andreas Volz, Carsten Mullen, William Shirran, Sally L. Smith, Brian O. Kalinina, Olga V. Müller, Rolf Koehnke, Jesko Nat Chem Article Ribosomally synthesized and post-translationally modified peptide natural products have provided many highly unusual scaffolds. This includes the intriguing alkaloids crocagins, which possess a tetracyclic core structure and whose biosynthesis has remained enigmatic. Here we use in vitro experiments to demonstrate that three proteins, CgnB, CgnC and CgnE, are sufficient for the production of the hallmark tetracyclic crocagin core from the precursor peptide CgnA. The crystal structures of the homologues CgnB and CgnE reveal them to be the founding members of a peptide-binding protein family and allow us to rationalize their distinct functions. We further show that the hydrolase CgnD liberates the crocagin core scaffold, which is subsequently N-methylated by CgnL. These insights allow us to propose a biosynthetic scheme for crocagins. Bioinformatic analyses based on these data led to the discovery of related biosynthetic pathways that may provide access to a structurally diverse family of peptide-derived pyrroloindoline alkaloids. [Image: see text] Nature Publishing Group UK 2023-03-09 2023 /pmc/articles/PMC10070186/ /pubmed/36894702 http://dx.doi.org/10.1038/s41557-023-01153-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Adam, Sebastian
Zheng, Dazhong
Klein, Andreas
Volz, Carsten
Mullen, William
Shirran, Sally L.
Smith, Brian O.
Kalinina, Olga V.
Müller, Rolf
Koehnke, Jesko
Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis
title Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis
title_full Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis
title_fullStr Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis
title_full_unstemmed Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis
title_short Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis
title_sort unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10070186/
https://www.ncbi.nlm.nih.gov/pubmed/36894702
http://dx.doi.org/10.1038/s41557-023-01153-w
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