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The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs

N6-Methyladenosine (m(6)A) is well-known for controlling different processes of linear RNA metabolism. Conversely, its role in the biogenesis and function of circular RNAs (circRNAs) is still poorly understood. Here, we characterize circRNA expression in the pathological context of rhabdomyosarcoma...

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Autores principales: Dattilo, Dario, Di Timoteo, Gaia, Setti, Adriano, Giuliani, Andrea, Peruzzi, Giovanna, Beltran Nebot, Manuel, Centrón-Broco, Alvaro, Mariani, Davide, Mozzetta, Chiara, Bozzoni, Irene
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10076346/
https://www.ncbi.nlm.nih.gov/pubmed/37019933
http://dx.doi.org/10.1038/s41467-023-37578-7
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author Dattilo, Dario
Di Timoteo, Gaia
Setti, Adriano
Giuliani, Andrea
Peruzzi, Giovanna
Beltran Nebot, Manuel
Centrón-Broco, Alvaro
Mariani, Davide
Mozzetta, Chiara
Bozzoni, Irene
author_facet Dattilo, Dario
Di Timoteo, Gaia
Setti, Adriano
Giuliani, Andrea
Peruzzi, Giovanna
Beltran Nebot, Manuel
Centrón-Broco, Alvaro
Mariani, Davide
Mozzetta, Chiara
Bozzoni, Irene
author_sort Dattilo, Dario
collection PubMed
description N6-Methyladenosine (m(6)A) is well-known for controlling different processes of linear RNA metabolism. Conversely, its role in the biogenesis and function of circular RNAs (circRNAs) is still poorly understood. Here, we characterize circRNA expression in the pathological context of rhabdomyosarcoma (RMS), observing a global increase when compared to wild-type myoblasts. For a set of circRNAs, such an increase is due to the raised expression of the m(6)A machinery, which we also find to control the proliferation activity of RMS cells. Furthermore, we identify the RNA helicase DDX5 as a mediator of the back-splicing reaction and as a co-factor of the m(6)A regulatory network. DDX5 and the m(6)A reader YTHDC1 are shown to interact and to promote the production of a common subset of circRNAs in RMS. In line with the observation that YTHDC1/DDX5 depletion reduces RMS proliferation, our results provide proteins and RNA candidates for the study of rhabdomyosarcoma tumorigenicity.
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spelling pubmed-100763462023-04-07 The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs Dattilo, Dario Di Timoteo, Gaia Setti, Adriano Giuliani, Andrea Peruzzi, Giovanna Beltran Nebot, Manuel Centrón-Broco, Alvaro Mariani, Davide Mozzetta, Chiara Bozzoni, Irene Nat Commun Article N6-Methyladenosine (m(6)A) is well-known for controlling different processes of linear RNA metabolism. Conversely, its role in the biogenesis and function of circular RNAs (circRNAs) is still poorly understood. Here, we characterize circRNA expression in the pathological context of rhabdomyosarcoma (RMS), observing a global increase when compared to wild-type myoblasts. For a set of circRNAs, such an increase is due to the raised expression of the m(6)A machinery, which we also find to control the proliferation activity of RMS cells. Furthermore, we identify the RNA helicase DDX5 as a mediator of the back-splicing reaction and as a co-factor of the m(6)A regulatory network. DDX5 and the m(6)A reader YTHDC1 are shown to interact and to promote the production of a common subset of circRNAs in RMS. In line with the observation that YTHDC1/DDX5 depletion reduces RMS proliferation, our results provide proteins and RNA candidates for the study of rhabdomyosarcoma tumorigenicity. Nature Publishing Group UK 2023-04-05 /pmc/articles/PMC10076346/ /pubmed/37019933 http://dx.doi.org/10.1038/s41467-023-37578-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dattilo, Dario
Di Timoteo, Gaia
Setti, Adriano
Giuliani, Andrea
Peruzzi, Giovanna
Beltran Nebot, Manuel
Centrón-Broco, Alvaro
Mariani, Davide
Mozzetta, Chiara
Bozzoni, Irene
The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs
title The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs
title_full The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs
title_fullStr The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs
title_full_unstemmed The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs
title_short The m(6)A reader YTHDC1 and the RNA helicase DDX5 control the production of rhabdomyosarcoma-enriched circRNAs
title_sort m(6)a reader ythdc1 and the rna helicase ddx5 control the production of rhabdomyosarcoma-enriched circrnas
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10076346/
https://www.ncbi.nlm.nih.gov/pubmed/37019933
http://dx.doi.org/10.1038/s41467-023-37578-7
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