dipwmsearch: a Python package for searching di-PWM motifs

MOTIVATION: Seeking probabilistic motifs in a sequence is a common task to annotate putative transcription factor binding sites or other RNA/DNA binding sites. Useful motif representations include position weight matrices (PWMs), dinucleotide PWMs (di-PWMs), and hidden Markov models (HMMs). Dinucleo...

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Detalles Bibliográficos
Autores principales: Mille, Marie, Ripoll, Julie, Cazaux, Bastien, Rivals, Eric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10081870/
https://www.ncbi.nlm.nih.gov/pubmed/37010504
http://dx.doi.org/10.1093/bioinformatics/btad141

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10081870/
https://www.ncbi.nlm.nih.gov/pubmed/37010504
http://dx.doi.org/10.1093/bioinformatics/btad141

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