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Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics

A group‐III iron containing 1,2‐propanediol oxidoreductase, FucO, (also known as lactaldehyde reductase) from Escherichia coli was examined regarding its structure–dynamics–function relationships in the catalysis of the NADH‐dependent reduction of (2S)‐lactaldehyde. Crystal structures of FucO varian...

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Autores principales: Zavarise, Alberto, Sridhar, Shruthi, Kiema, Tiila‐Riikka, Wierenga, Rikkert K., Widersten, Mikael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10087678/
https://www.ncbi.nlm.nih.gov/pubmed/36002154
http://dx.doi.org/10.1111/febs.16603
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author Zavarise, Alberto
Sridhar, Shruthi
Kiema, Tiila‐Riikka
Wierenga, Rikkert K.
Widersten, Mikael
author_facet Zavarise, Alberto
Sridhar, Shruthi
Kiema, Tiila‐Riikka
Wierenga, Rikkert K.
Widersten, Mikael
author_sort Zavarise, Alberto
collection PubMed
description A group‐III iron containing 1,2‐propanediol oxidoreductase, FucO, (also known as lactaldehyde reductase) from Escherichia coli was examined regarding its structure–dynamics–function relationships in the catalysis of the NADH‐dependent reduction of (2S)‐lactaldehyde. Crystal structures of FucO variants in the presence or absence of cofactors have been determined, illustrating large domain movements between the apo and holo enzyme structures. Different structures of FucO variants co‐crystallized with NAD(+) or NADH together with substrate further suggest dynamic properties of the nicotinamide moiety of the coenzyme that are important for the reaction mechanism. Modelling of the native substrate (2S)‐lactaldehyde into the active site can explain the stereoselectivity exhibited by the enzyme, with a critical hydrogen bond interaction between the (2S)‐hydroxyl and the side‐chain of N151, as well as the previously experimentally demonstrated pro‐(R) selectivity in hydride transfer from NADH to the aldehydic carbon. Furthermore, the deuterium kinetic isotope effect of hydride transfer suggests that reduction chemistry is the main rate‐limiting step for turnover which is not the case in FucO catalysed alcohol oxidation. We further propose that a water molecule in the active site – hydrogen bonded to a conserved histidine (H267) and the 2′‐hydroxyl of the coenzyme ribose – functions as a catalytic proton donor in the protonation of the product alcohol. A hydrogen bond network of water molecules and the side‐chains of amino acid residues D360 and H267 links bulk solvent to this proposed catalytic water molecule.
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spelling pubmed-100876782023-04-12 Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics Zavarise, Alberto Sridhar, Shruthi Kiema, Tiila‐Riikka Wierenga, Rikkert K. Widersten, Mikael FEBS J Original Articles A group‐III iron containing 1,2‐propanediol oxidoreductase, FucO, (also known as lactaldehyde reductase) from Escherichia coli was examined regarding its structure–dynamics–function relationships in the catalysis of the NADH‐dependent reduction of (2S)‐lactaldehyde. Crystal structures of FucO variants in the presence or absence of cofactors have been determined, illustrating large domain movements between the apo and holo enzyme structures. Different structures of FucO variants co‐crystallized with NAD(+) or NADH together with substrate further suggest dynamic properties of the nicotinamide moiety of the coenzyme that are important for the reaction mechanism. Modelling of the native substrate (2S)‐lactaldehyde into the active site can explain the stereoselectivity exhibited by the enzyme, with a critical hydrogen bond interaction between the (2S)‐hydroxyl and the side‐chain of N151, as well as the previously experimentally demonstrated pro‐(R) selectivity in hydride transfer from NADH to the aldehydic carbon. Furthermore, the deuterium kinetic isotope effect of hydride transfer suggests that reduction chemistry is the main rate‐limiting step for turnover which is not the case in FucO catalysed alcohol oxidation. We further propose that a water molecule in the active site – hydrogen bonded to a conserved histidine (H267) and the 2′‐hydroxyl of the coenzyme ribose – functions as a catalytic proton donor in the protonation of the product alcohol. A hydrogen bond network of water molecules and the side‐chains of amino acid residues D360 and H267 links bulk solvent to this proposed catalytic water molecule. John Wiley and Sons Inc. 2022-09-06 2023-01 /pmc/articles/PMC10087678/ /pubmed/36002154 http://dx.doi.org/10.1111/febs.16603 Text en © 2022 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Articles
Zavarise, Alberto
Sridhar, Shruthi
Kiema, Tiila‐Riikka
Wierenga, Rikkert K.
Widersten, Mikael
Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics
title Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics
title_full Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics
title_fullStr Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics
title_full_unstemmed Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics
title_short Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics
title_sort structures of lactaldehyde reductase, fuco, link enzyme activity to hydrogen bond networks and conformational dynamics
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10087678/
https://www.ncbi.nlm.nih.gov/pubmed/36002154
http://dx.doi.org/10.1111/febs.16603
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