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Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria
Benzoxazolinate is a rare bis‐heterocyclic moiety that interacts with proteins and DNA and confers extraordinary bioactivities on natural products, such as C‐1027. However, the biosynthetic gene responsible for the key cyclization step of benzoxazolinate remains unclear. Herein, we show a putative a...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10098953/ https://www.ncbi.nlm.nih.gov/pubmed/36198080 http://dx.doi.org/10.1002/anie.202206106 |
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author | Shi, Yi‐Ming Crames, Jan J. Czech, Laura Bozhüyük, Kenan A. J. Shi, Yan‐Ni Hirschmann, Merle Lamberth, Stefanie Claus, Peter Paczia, Nicole Rückert, Christian Kalinowski, Jörn Bange, Gert Bode, Helge B. |
author_facet | Shi, Yi‐Ming Crames, Jan J. Czech, Laura Bozhüyük, Kenan A. J. Shi, Yan‐Ni Hirschmann, Merle Lamberth, Stefanie Claus, Peter Paczia, Nicole Rückert, Christian Kalinowski, Jörn Bange, Gert Bode, Helge B. |
author_sort | Shi, Yi‐Ming |
collection | PubMed |
description | Benzoxazolinate is a rare bis‐heterocyclic moiety that interacts with proteins and DNA and confers extraordinary bioactivities on natural products, such as C‐1027. However, the biosynthetic gene responsible for the key cyclization step of benzoxazolinate remains unclear. Herein, we show a putative acyl AMP‐ligase responsible for the last cyclization step. We used the enzyme as a probe for genome mining and discovered that the orphan benzobactin gene cluster in entomopathogenic bacteria prevails across Proteobacteria and Firmicutes. It turns out that Pseudomonas chlororaphis produces various benzobactins, whose biosynthesis is highlighted by a synergistic effect of two unclustered genes encoding enzymes on boosting benzobactin production; the formation of non‐proteinogenic 2‐hydroxymethylserine by a serine hydroxymethyltransferase; and the types I and II NRPS architecture for structural diversity. Our findings reveal the biosynthetic potential of a widespread benzobactin gene cluster. |
format | Online Article Text |
id | pubmed-10098953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100989532023-04-14 Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria Shi, Yi‐Ming Crames, Jan J. Czech, Laura Bozhüyük, Kenan A. J. Shi, Yan‐Ni Hirschmann, Merle Lamberth, Stefanie Claus, Peter Paczia, Nicole Rückert, Christian Kalinowski, Jörn Bange, Gert Bode, Helge B. Angew Chem Int Ed Engl Research Articles Benzoxazolinate is a rare bis‐heterocyclic moiety that interacts with proteins and DNA and confers extraordinary bioactivities on natural products, such as C‐1027. However, the biosynthetic gene responsible for the key cyclization step of benzoxazolinate remains unclear. Herein, we show a putative acyl AMP‐ligase responsible for the last cyclization step. We used the enzyme as a probe for genome mining and discovered that the orphan benzobactin gene cluster in entomopathogenic bacteria prevails across Proteobacteria and Firmicutes. It turns out that Pseudomonas chlororaphis produces various benzobactins, whose biosynthesis is highlighted by a synergistic effect of two unclustered genes encoding enzymes on boosting benzobactin production; the formation of non‐proteinogenic 2‐hydroxymethylserine by a serine hydroxymethyltransferase; and the types I and II NRPS architecture for structural diversity. Our findings reveal the biosynthetic potential of a widespread benzobactin gene cluster. John Wiley and Sons Inc. 2022-11-17 2022-12-19 /pmc/articles/PMC10098953/ /pubmed/36198080 http://dx.doi.org/10.1002/anie.202206106 Text en © 2022 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Shi, Yi‐Ming Crames, Jan J. Czech, Laura Bozhüyük, Kenan A. J. Shi, Yan‐Ni Hirschmann, Merle Lamberth, Stefanie Claus, Peter Paczia, Nicole Rückert, Christian Kalinowski, Jörn Bange, Gert Bode, Helge B. Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria |
title | Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria |
title_full | Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria |
title_fullStr | Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria |
title_full_unstemmed | Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria |
title_short | Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria |
title_sort | genome mining enabled by biosynthetic characterization uncovers a class of benzoxazolinate‐containing natural products in diverse bacteria |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10098953/ https://www.ncbi.nlm.nih.gov/pubmed/36198080 http://dx.doi.org/10.1002/anie.202206106 |
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