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Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria

Benzoxazolinate is a rare bis‐heterocyclic moiety that interacts with proteins and DNA and confers extraordinary bioactivities on natural products, such as C‐1027. However, the biosynthetic gene responsible for the key cyclization step of benzoxazolinate remains unclear. Herein, we show a putative a...

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Autores principales: Shi, Yi‐Ming, Crames, Jan J., Czech, Laura, Bozhüyük, Kenan A. J., Shi, Yan‐Ni, Hirschmann, Merle, Lamberth, Stefanie, Claus, Peter, Paczia, Nicole, Rückert, Christian, Kalinowski, Jörn, Bange, Gert, Bode, Helge B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10098953/
https://www.ncbi.nlm.nih.gov/pubmed/36198080
http://dx.doi.org/10.1002/anie.202206106
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author Shi, Yi‐Ming
Crames, Jan J.
Czech, Laura
Bozhüyük, Kenan A. J.
Shi, Yan‐Ni
Hirschmann, Merle
Lamberth, Stefanie
Claus, Peter
Paczia, Nicole
Rückert, Christian
Kalinowski, Jörn
Bange, Gert
Bode, Helge B.
author_facet Shi, Yi‐Ming
Crames, Jan J.
Czech, Laura
Bozhüyük, Kenan A. J.
Shi, Yan‐Ni
Hirschmann, Merle
Lamberth, Stefanie
Claus, Peter
Paczia, Nicole
Rückert, Christian
Kalinowski, Jörn
Bange, Gert
Bode, Helge B.
author_sort Shi, Yi‐Ming
collection PubMed
description Benzoxazolinate is a rare bis‐heterocyclic moiety that interacts with proteins and DNA and confers extraordinary bioactivities on natural products, such as C‐1027. However, the biosynthetic gene responsible for the key cyclization step of benzoxazolinate remains unclear. Herein, we show a putative acyl AMP‐ligase responsible for the last cyclization step. We used the enzyme as a probe for genome mining and discovered that the orphan benzobactin gene cluster in entomopathogenic bacteria prevails across Proteobacteria and Firmicutes. It turns out that Pseudomonas chlororaphis produces various benzobactins, whose biosynthesis is highlighted by a synergistic effect of two unclustered genes encoding enzymes on boosting benzobactin production; the formation of non‐proteinogenic 2‐hydroxymethylserine by a serine hydroxymethyltransferase; and the types I and II NRPS architecture for structural diversity. Our findings reveal the biosynthetic potential of a widespread benzobactin gene cluster.
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spelling pubmed-100989532023-04-14 Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria Shi, Yi‐Ming Crames, Jan J. Czech, Laura Bozhüyük, Kenan A. J. Shi, Yan‐Ni Hirschmann, Merle Lamberth, Stefanie Claus, Peter Paczia, Nicole Rückert, Christian Kalinowski, Jörn Bange, Gert Bode, Helge B. Angew Chem Int Ed Engl Research Articles Benzoxazolinate is a rare bis‐heterocyclic moiety that interacts with proteins and DNA and confers extraordinary bioactivities on natural products, such as C‐1027. However, the biosynthetic gene responsible for the key cyclization step of benzoxazolinate remains unclear. Herein, we show a putative acyl AMP‐ligase responsible for the last cyclization step. We used the enzyme as a probe for genome mining and discovered that the orphan benzobactin gene cluster in entomopathogenic bacteria prevails across Proteobacteria and Firmicutes. It turns out that Pseudomonas chlororaphis produces various benzobactins, whose biosynthesis is highlighted by a synergistic effect of two unclustered genes encoding enzymes on boosting benzobactin production; the formation of non‐proteinogenic 2‐hydroxymethylserine by a serine hydroxymethyltransferase; and the types I and II NRPS architecture for structural diversity. Our findings reveal the biosynthetic potential of a widespread benzobactin gene cluster. John Wiley and Sons Inc. 2022-11-17 2022-12-19 /pmc/articles/PMC10098953/ /pubmed/36198080 http://dx.doi.org/10.1002/anie.202206106 Text en © 2022 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Shi, Yi‐Ming
Crames, Jan J.
Czech, Laura
Bozhüyük, Kenan A. J.
Shi, Yan‐Ni
Hirschmann, Merle
Lamberth, Stefanie
Claus, Peter
Paczia, Nicole
Rückert, Christian
Kalinowski, Jörn
Bange, Gert
Bode, Helge B.
Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria
title Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria
title_full Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria
title_fullStr Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria
title_full_unstemmed Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria
title_short Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate‐Containing Natural Products in Diverse Bacteria
title_sort genome mining enabled by biosynthetic characterization uncovers a class of benzoxazolinate‐containing natural products in diverse bacteria
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10098953/
https://www.ncbi.nlm.nih.gov/pubmed/36198080
http://dx.doi.org/10.1002/anie.202206106
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