excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies

SUMMARY: Exclusion regions are sections of reference genomes with abnormal pileups of short sequencing reads. Removing reads overlapping them improves biological signal, and these benefits are most pronounced in differential analysis settings. Several labs created exclusion region sets, available pr...

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Detalles Bibliográficos
Autores principales: Ogata, Jonathan D, Mu, Wancen, Davis, Eric S, Xue, Bingjie, Harrell, J Chuck, Sheffield, Nathan C, Phanstiel, Douglas H, Love, Michael I, Dozmorov, Mikhail G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10126321/
https://www.ncbi.nlm.nih.gov/pubmed/37067481
http://dx.doi.org/10.1093/bioinformatics/btad198

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10126321/
https://www.ncbi.nlm.nih.gov/pubmed/37067481
http://dx.doi.org/10.1093/bioinformatics/btad198

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