Cargando…

An unbiased AAV-STARR-seq screen revealing the enhancer activity map of genomic regions in the mouse brain in vivo

Enhancers are important cis-regulatory elements controlling cell-type specific expression patterns of genes. Furthermore, combinations of enhancers and minimal promoters are utilized to construct small, artificial promoters for gene delivery vectors. Large-scale functional screening methodology to c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chan, Ya-Chien, Kienle, Eike, Oti, Martin, Di Liddo, Antonella, Mendez-Lago, Maria, Aschauer, Dominik F., Peter, Manuel, Pagani, Michaela, Arnold, Cosmas, Vonderheit, Andreas, Schön, Christian, Kreuz, Sebastian, Stark, Alexander, Rumpel, Simon
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10130037/ https://www.ncbi.nlm.nih.gov/pubmed/37185990 http://dx.doi.org/10.1038/s41598-023-33448-w

Ejemplares similares

STARR‐seq and UMI‐STARR‐seq: Assessing Enhancer Activities for Genome‐Wide‐, High‐, and Low‐Complexity Candidate Libraries
por: Neumayr, Christoph, et al.
Publicado: (2019)

Analysis of Transduction Efficiency, Tropism and Axonal Transport of AAV Serotypes 1, 2, 5, 6, 8 and 9 in the Mouse Brain
por: Aschauer, Dominik F., et al.
Publicado: (2013)

Challenges and considerations for reproducibility of STARR-seq assays
por: Das, Maitreya, et al.
Publicado: (2023)

Global Quantitative Mapping of Enhancers in Rice by STARR-seq
por: Sun, Jialei, et al.
Publicado: (2019)

STARRPeaker: uniform processing and accurate identification of STARR-seq active regions
por: Lee, Donghoon, et al.
Publicado: (2020)

Correcting signal biases and detecting regulatory elements in STARR-seq data
por: Kim, Young-Sook, et al.
Publicado: (2021)

Computational Analysis of Maize Enhancer Regulatory Elements Using ATAC-STARR-seq
por: Marand, Alexandre P.
Publicado: (2023)

Underlying causes for prevalent false positives and false negatives in STARR-seq data
por: Ni, Pengyu, et al.
Publicado: (2023)

David Starr :el ranger del espacio /
por: Asimov, Isaac, 1920-1992
Publicado: (1976)

Genome‐wide prediction of activating regulatory elements in rice by combining STARR‐seq with FACS
por: Tian, Wei, et al.
Publicado: (2022)

Lucky Starr : el gran sol de Mercurio
por: Asimov, Isaac, 1920-1992
Publicado: (1980)

Uncovering the Starr of the Cell – SUN and KASH Proteins: An Interview with Daniel A. Starr, PhD
por: Bacher, Sarah Z.
Publicado: (2019)

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise
por: Schöne, Stefanie, et al.
Publicado: (2018)

Functional Definition of Thyroid Hormone Response Elements Based on a Synthetic STARR-seq Screen
por: Flamant, Frédéric, et al.
Publicado: (2022)

STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells
por: Peng, Tianran, et al.
Publicado: (2020)

Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq
por: Glaser, Laura V, et al.
Publicado: (2021)

ATAC-STARR-seq reveals transcription factor–bound activators and silencers within chromatin-accessible regions of the human genome
por: Hansen, Tyler J., et al.
Publicado: (2022)

STARR with Contour® Transtar™: prospective multicentre European study
por: Lenisa, L, et al.
Publicado: (2009)

C. Starr Brewster, M. D., D. D. S.
Publicado: (1842)

Lucky Starr y el gran sol de Mercurio /
por: Asimov, Isaac, 1920-1992
Publicado: (1995)

Morphological rectal alterations following STARR performed for obstructed defecation syndrome
por: Reginelli, A, et al.
Publicado: (2011)

Mr. R. N. Starr, in Reply to Dr. Kinglake, on the Obstetric Practice
Publicado: (1816)

49 years of normal functioning Starr–Edwards aortic valve prosthesis
por: Sabouni, Mouhamed Amr, et al.
Publicado: (2020)

Global and unbiased detection of splice junctions from RNA-seq data
por: Ameur, Adam, et al.
Publicado: (2010)

Standardized collection of MNase-seq experiments enables unbiased dataset comparisons
por: Rizzo, Jason M, et al.
Publicado: (2012)

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
por: Zacher, Benedikt, et al.
Publicado: (2010)

Laparoscopic approach in a case of retroperitoneal and mesorectal haematoma following STARR procedure
por: Cerullo, Guido, et al.
Publicado: (2014)

Functional assessment of human enhancer activities using whole-genome STARR-sequencing
por: Liu, Yuwen, et al.
Publicado: (2017)

1378. Seroprevalence and risk factors for cysticercosis in Mexican-Americans in Starr County, Texas
por: Duffey, Megan M, et al.
Publicado: (2023)

Transcriptional linkage analysis with in vivo AAV-Perturb-seq
por: Santinha, Antonio J., et al.
Publicado: (2023)

DRUG-seq Provides Unbiased Biological Activity Readouts for Neuroscience Drug Discovery
por: Li, Jingyao, et al.
Publicado: (2022)

Discrete cortical representations and their stability in the presence of synaptic turnover
por: Eppler, Bastian, et al.
Publicado: (2015)

Stapled Transanal Rectal Resection (Starr) in the Treatment of Obstructed Defecation: A Systematic Review
por: Ripamonti, Lorenzo, et al.
Publicado: (2022)

Prediction of Complex Traits: Robust Alternatives to Best Linear Unbiased Prediction
por: Gianola, Daniel, et al.
Publicado: (2018)

ChIP-AP: an integrated analysis pipeline for unbiased ChIP-seq analysis
por: Suryatenggara, Jeremiah, et al.
Publicado: (2021)

A high‐throughput method to identify trans‐activation domains within transcription factor sequences
por: Arnold, Cosmas D, et al.
Publicado: (2018)

Starr–Edwards aortic valve: 50+ years and still going strong: a case report
por: Amrane, Mourad, et al.
Publicado: (2017)

Using the Starr Frame and Da Vinci surgery system for pelvic fracture and sacral nerve injury
por: Peng, Ye, et al.
Publicado: (2019)

Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo
por: Chen, Poshen B, et al.
Publicado: (2014)

TRACE-seq: A transgenic system for unbiased and non-invasive transcriptome profiling of living cells
por: Cherbonneau, François, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_eq9a72uh84erljbtblqu7fdo5r