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Aging is associated with a systemic length-associated transcriptome imbalance

Aging is among the most important risk factors for morbidity and mortality. To contribute toward a molecular understanding of aging, we analyzed age-resolved transcriptomic data from multiple studies. Here, we show that transcript length alone explains most transcriptional changes observed with agin...

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Autores principales: Stoeger, Thomas, Grant, Rogan A., McQuattie-Pimentel, Alexandra C., Anekalla, Kishore R., Liu, Sophia S., Tejedor-Navarro, Heliodoro, Singer, Benjamin D., Abdala-Valencia, Hiam, Schwake, Michael, Tetreault, Marie-Pier, Perlman, Harris, Balch, William E., Chandel, Navdeep S., Ridge, Karen M., Sznajder, Jacob I., Morimoto, Richard I., Misharin, Alexander V., Budinger, G. R. Scott, Nunes Amaral, Luis A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10154227/
https://www.ncbi.nlm.nih.gov/pubmed/37118543
http://dx.doi.org/10.1038/s43587-022-00317-6
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author Stoeger, Thomas
Grant, Rogan A.
McQuattie-Pimentel, Alexandra C.
Anekalla, Kishore R.
Liu, Sophia S.
Tejedor-Navarro, Heliodoro
Singer, Benjamin D.
Abdala-Valencia, Hiam
Schwake, Michael
Tetreault, Marie-Pier
Perlman, Harris
Balch, William E.
Chandel, Navdeep S.
Ridge, Karen M.
Sznajder, Jacob I.
Morimoto, Richard I.
Misharin, Alexander V.
Budinger, G. R. Scott
Nunes Amaral, Luis A.
author_facet Stoeger, Thomas
Grant, Rogan A.
McQuattie-Pimentel, Alexandra C.
Anekalla, Kishore R.
Liu, Sophia S.
Tejedor-Navarro, Heliodoro
Singer, Benjamin D.
Abdala-Valencia, Hiam
Schwake, Michael
Tetreault, Marie-Pier
Perlman, Harris
Balch, William E.
Chandel, Navdeep S.
Ridge, Karen M.
Sznajder, Jacob I.
Morimoto, Richard I.
Misharin, Alexander V.
Budinger, G. R. Scott
Nunes Amaral, Luis A.
author_sort Stoeger, Thomas
collection PubMed
description Aging is among the most important risk factors for morbidity and mortality. To contribute toward a molecular understanding of aging, we analyzed age-resolved transcriptomic data from multiple studies. Here, we show that transcript length alone explains most transcriptional changes observed with aging in mice and humans. We present three lines of evidence supporting the biological importance of the uncovered transcriptome imbalance. First, in vertebrates the length association primarily displays a lower relative abundance of long transcripts in aging. Second, eight antiaging interventions of the Interventions Testing Program of the National Institute on Aging can counter this length association. Third, we find that in humans and mice the genes with the longest transcripts enrich for genes reported to extend lifespan, whereas those with the shortest transcripts enrich for genes reported to shorten lifespan. Our study opens fundamental questions on aging and the organization of transcriptomes.
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spelling pubmed-101542272023-05-04 Aging is associated with a systemic length-associated transcriptome imbalance Stoeger, Thomas Grant, Rogan A. McQuattie-Pimentel, Alexandra C. Anekalla, Kishore R. Liu, Sophia S. Tejedor-Navarro, Heliodoro Singer, Benjamin D. Abdala-Valencia, Hiam Schwake, Michael Tetreault, Marie-Pier Perlman, Harris Balch, William E. Chandel, Navdeep S. Ridge, Karen M. Sznajder, Jacob I. Morimoto, Richard I. Misharin, Alexander V. Budinger, G. R. Scott Nunes Amaral, Luis A. Nat Aging Analysis Aging is among the most important risk factors for morbidity and mortality. To contribute toward a molecular understanding of aging, we analyzed age-resolved transcriptomic data from multiple studies. Here, we show that transcript length alone explains most transcriptional changes observed with aging in mice and humans. We present three lines of evidence supporting the biological importance of the uncovered transcriptome imbalance. First, in vertebrates the length association primarily displays a lower relative abundance of long transcripts in aging. Second, eight antiaging interventions of the Interventions Testing Program of the National Institute on Aging can counter this length association. Third, we find that in humans and mice the genes with the longest transcripts enrich for genes reported to extend lifespan, whereas those with the shortest transcripts enrich for genes reported to shorten lifespan. Our study opens fundamental questions on aging and the organization of transcriptomes. Nature Publishing Group US 2022-12-09 2022 /pmc/articles/PMC10154227/ /pubmed/37118543 http://dx.doi.org/10.1038/s43587-022-00317-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Analysis
Stoeger, Thomas
Grant, Rogan A.
McQuattie-Pimentel, Alexandra C.
Anekalla, Kishore R.
Liu, Sophia S.
Tejedor-Navarro, Heliodoro
Singer, Benjamin D.
Abdala-Valencia, Hiam
Schwake, Michael
Tetreault, Marie-Pier
Perlman, Harris
Balch, William E.
Chandel, Navdeep S.
Ridge, Karen M.
Sznajder, Jacob I.
Morimoto, Richard I.
Misharin, Alexander V.
Budinger, G. R. Scott
Nunes Amaral, Luis A.
Aging is associated with a systemic length-associated transcriptome imbalance
title Aging is associated with a systemic length-associated transcriptome imbalance
title_full Aging is associated with a systemic length-associated transcriptome imbalance
title_fullStr Aging is associated with a systemic length-associated transcriptome imbalance
title_full_unstemmed Aging is associated with a systemic length-associated transcriptome imbalance
title_short Aging is associated with a systemic length-associated transcriptome imbalance
title_sort aging is associated with a systemic length-associated transcriptome imbalance
topic Analysis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10154227/
https://www.ncbi.nlm.nih.gov/pubmed/37118543
http://dx.doi.org/10.1038/s43587-022-00317-6
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