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Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases

The diagnosis of neurodegenerative diseases is made complex by the heterogenous phenotype of the patients and the regular occurrence of concomitant pathology. Studying clinicopathological correlations in autopsy series is a central approach to improve pathological prediction in clinical practice. Ho...

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Autores principales: Journe‐Mallet, Isabelle, Gouju, Julien, Etcharry‐Bouyx, Frédérique, Chauvire, Valérie, Guillet‐Pichon, Virginie, Scherer‐Gagou, Clarisse, Prundean, Adriana, Godard, Sophie, Lecluse, Aldéric, Cassereau, Julien, Verny, Christophe, Letournel, Franck, Codron, Philippe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10154372/
https://www.ncbi.nlm.nih.gov/pubmed/36536531
http://dx.doi.org/10.1111/bpa.13138
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author Journe‐Mallet, Isabelle
Gouju, Julien
Etcharry‐Bouyx, Frédérique
Chauvire, Valérie
Guillet‐Pichon, Virginie
Scherer‐Gagou, Clarisse
Prundean, Adriana
Godard, Sophie
Lecluse, Aldéric
Cassereau, Julien
Verny, Christophe
Letournel, Franck
Codron, Philippe
author_facet Journe‐Mallet, Isabelle
Gouju, Julien
Etcharry‐Bouyx, Frédérique
Chauvire, Valérie
Guillet‐Pichon, Virginie
Scherer‐Gagou, Clarisse
Prundean, Adriana
Godard, Sophie
Lecluse, Aldéric
Cassereau, Julien
Verny, Christophe
Letournel, Franck
Codron, Philippe
author_sort Journe‐Mallet, Isabelle
collection PubMed
description The diagnosis of neurodegenerative diseases is made complex by the heterogenous phenotype of the patients and the regular occurrence of concomitant pathology. Studying clinicopathological correlations in autopsy series is a central approach to improve pathological prediction in clinical practice. However, such method requires a wealth of information, and the use of standard spreadsheet software is hardly suitable. To overcome this constraint, we designed a customizable and freely available neuropathology form with 456 data entry fields driven by an open‐source DataBase Management Systems (DBMS) using Structured Query Language (SQL). This approach allowed us to optimize the compilation of clinical and pathological data from our brain collection (264 autopsied patients, 22,885 data points). Information was then easily retrieved using general and specific queries, facilitating the analysis of demographics, clinicopathological correlations, and incidental and concomitant proteinopathies. Tau, amyloid‐β and α‐synuclein incidental pathology was observed in respectively 78.1%, 42.8%, and 10.7% of all the patients. These proportions increased with age, reaching 100% for Tau pathology after 80. Concomitant proteinopathy was observed in 46.4% of the patients diagnosed with neurodegenerative diseases and prion disease. We observed a particularly high rate of co‐pathology in patients with Dementia with Lewy bodies (81.3% of associated Tau and amyloid‐β pathology) and Creutzfeldt–Jakob disease (68.4% of associated Tau pathology). Finally, we used specific queries to identify old cases that could meet newly defined neuropathological criteria and revised the diagnosis of a 90‐year‐old patient to LATE Stage 2. Increasing our understanding of clinicopathological correlations in neurodegenerative diseases is crucial given the implications in clinical diagnosis, biomarker identification and targeted therapies assessment. The precise characterization of clinical and pathological data of autopsy series remains a central approach but the large amount of generated data should encourage a more systematic use of DBMS.
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spelling pubmed-101543722023-05-04 Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases Journe‐Mallet, Isabelle Gouju, Julien Etcharry‐Bouyx, Frédérique Chauvire, Valérie Guillet‐Pichon, Virginie Scherer‐Gagou, Clarisse Prundean, Adriana Godard, Sophie Lecluse, Aldéric Cassereau, Julien Verny, Christophe Letournel, Franck Codron, Philippe Brain Pathol Research Articles The diagnosis of neurodegenerative diseases is made complex by the heterogenous phenotype of the patients and the regular occurrence of concomitant pathology. Studying clinicopathological correlations in autopsy series is a central approach to improve pathological prediction in clinical practice. However, such method requires a wealth of information, and the use of standard spreadsheet software is hardly suitable. To overcome this constraint, we designed a customizable and freely available neuropathology form with 456 data entry fields driven by an open‐source DataBase Management Systems (DBMS) using Structured Query Language (SQL). This approach allowed us to optimize the compilation of clinical and pathological data from our brain collection (264 autopsied patients, 22,885 data points). Information was then easily retrieved using general and specific queries, facilitating the analysis of demographics, clinicopathological correlations, and incidental and concomitant proteinopathies. Tau, amyloid‐β and α‐synuclein incidental pathology was observed in respectively 78.1%, 42.8%, and 10.7% of all the patients. These proportions increased with age, reaching 100% for Tau pathology after 80. Concomitant proteinopathy was observed in 46.4% of the patients diagnosed with neurodegenerative diseases and prion disease. We observed a particularly high rate of co‐pathology in patients with Dementia with Lewy bodies (81.3% of associated Tau and amyloid‐β pathology) and Creutzfeldt–Jakob disease (68.4% of associated Tau pathology). Finally, we used specific queries to identify old cases that could meet newly defined neuropathological criteria and revised the diagnosis of a 90‐year‐old patient to LATE Stage 2. Increasing our understanding of clinicopathological correlations in neurodegenerative diseases is crucial given the implications in clinical diagnosis, biomarker identification and targeted therapies assessment. The precise characterization of clinical and pathological data of autopsy series remains a central approach but the large amount of generated data should encourage a more systematic use of DBMS. John Wiley and Sons Inc. 2022-12-19 /pmc/articles/PMC10154372/ /pubmed/36536531 http://dx.doi.org/10.1111/bpa.13138 Text en © 2022 The Authors. Brain Pathology published by John Wiley & Sons Ltd on behalf of International Society of Neuropathology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Journe‐Mallet, Isabelle
Gouju, Julien
Etcharry‐Bouyx, Frédérique
Chauvire, Valérie
Guillet‐Pichon, Virginie
Scherer‐Gagou, Clarisse
Prundean, Adriana
Godard, Sophie
Lecluse, Aldéric
Cassereau, Julien
Verny, Christophe
Letournel, Franck
Codron, Philippe
Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases
title Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases
title_full Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases
title_fullStr Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases
title_full_unstemmed Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases
title_short Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases
title_sort design and application of a customizable relational database to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10154372/
https://www.ncbi.nlm.nih.gov/pubmed/36536531
http://dx.doi.org/10.1111/bpa.13138
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