RabbitTClust: enabling fast clustering analysis of millions of bacteria genomes with MinHash sketches

We present RabbitTClust, a fast and memory-efficient genome clustering tool based on sketch-based distance estimation. Our approach enables efficient processing of large-scale datasets by combining dimensionality reduction techniques with streaming and parallelization on modern multi-core platforms....

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Detalles Bibliográficos
Autores principales: Xu, Xiaoming, Yin, Zekun, Yan, Lifeng, Zhang, Hao, Xu, Borui, Wei, Yanjie, Niu, Beifang, Schmidt, Bertil, Liu, Weiguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10190105/
https://www.ncbi.nlm.nih.gov/pubmed/37198663
http://dx.doi.org/10.1186/s13059-023-02961-6

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10190105/
https://www.ncbi.nlm.nih.gov/pubmed/37198663
http://dx.doi.org/10.1186/s13059-023-02961-6

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