Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs

MOTIVATION: Pairwise sequence alignment is a very time-consuming step in common bioinformatics pipelines. Speeding up this step requires heuristics, efficient implementations, and/or hardware acceleration. A promising candidate for all of the above is the recently proposed GenASM algorithm. We ident...

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Detalles Bibliográficos
Autores principales: Lindegger, Joël, Senol Cali, Damla, Alser, Mohammed, Gómez-Luna, Juan, Ghiasi, Nika Mansouri, Mutlu, Onur
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191611/
https://www.ncbi.nlm.nih.gov/pubmed/36961334
http://dx.doi.org/10.1093/bioinformatics/btad151

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191611/
https://www.ncbi.nlm.nih.gov/pubmed/36961334
http://dx.doi.org/10.1093/bioinformatics/btad151

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