SPUMONI 2: improved classification using a pangenome index of minimizer digests

Genomics analyses use large reference sequence collections, like pangenomes or taxonomic databases. SPUMONI 2 is an efficient tool for sequence classification of both short and long reads. It performs multi-class classification using a novel sampled document array. By incorporating minimizers, SPUMO...

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Detalles Bibliográficos
Autores principales: Ahmed, Omar Y., Rossi, Massimiliano, Gagie, Travis, Boucher, Christina, Langmead, Ben
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10197461/
https://www.ncbi.nlm.nih.gov/pubmed/37202771
http://dx.doi.org/10.1186/s13059-023-02958-1

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10197461/
https://www.ncbi.nlm.nih.gov/pubmed/37202771
http://dx.doi.org/10.1186/s13059-023-02958-1

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